NM_054027.6(ANKH):c.-80GTCGCCCC[1] AND Chondrocalcinosis

Germline classification:: Benign (1 submission)
Last evaluated:: Jun 14, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000270060.5

Allele description [Variation Report for NM_054027.6(ANKH):c.-80GTCGCCCC[1]]

NM_054027.6(ANKH):c.-80GTCGCCCC[1]

Genes:

LOC129993725:ATAC-STARR-seq lymphoblastoid silent region 15944 [Gene]
ANKH:ANKH inorganic pyrophosphate transport regulator [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

5p15.2

Genomic location:

Preferred name:

NM_054027.6(ANKH):c.-80GTCGCCCC[1]

HGVS:

NC_000005.10:g.14871519CGGGGCGA[1]
NG_008273.2:g.5259GTCGCCCC[1]
NM_054027.6:c.-80GTCGCCCC[1]MANE SELECT
LRG_1362t1:c.-80GTCGCCCC[1]
LRG_1362:g.5259GTCGCCCC[1]
NC_000005.9:g.14871628CGGGGCGA[1]
NM_054027.4:c.-72_-65delGTCGCCCC
NM_054027.6:c.-72_-65delMANE SELECT

Links:

dbSNP: rs139106733

NCBI 1000 Genomes Browser:

rs139106733

Molecular consequence:

NM_054027.6:c.-80GTCGCCCC[1] - 5 prime UTR variant - [Sequence Ontology: SO:0001623]

Condition(s)

Name:: Chondrocalcinosis
Identifiers:: MONDO: MONDO:0001314; MedGen: C0553730; Human Phenotype Ontology: HP:0000934

Recent activity

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sialic acid-binding Ig-like lectin 15 precursor [Homo sapiens]
sialic acid-binding Ig-like lectin 15 precursor [Homo sapiens]
gi|47106069|ref|NP_998767.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000454610	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Benign (Jun 14, 2016)	germline	clinical testing	ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000454610

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Benign
(Jun 14, 2016)

germline

clinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000454610.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 14, 2023

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