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NM_000044.6(AR):c.2314A>C (p.Asn772His) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 9, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000263998.1

Allele description [Variation Report for NM_000044.6(AR):c.2314A>C (p.Asn772His)]

NM_000044.6(AR):c.2314A>C (p.Asn772His)

Gene:
AR:androgen receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq12
Genomic location:
Preferred name:
NM_000044.6(AR):c.2314A>C (p.Asn772His)
HGVS:
  • NC_000023.11:g.67717618A>C
  • NG_009014.2:g.178587A>C
  • NM_000044.6:c.2314A>CMANE SELECT
  • NM_001011645.3:c.718A>C
  • NP_000035.2:p.Asn772His
  • NP_001011645.1:p.Asn240His
  • LRG_1406t1:c.2314A>C
  • LRG_1406:g.178587A>C
  • LRG_1406p1:p.Asn772His
  • NC_000023.10:g.66937460A>C
  • NM_000044.2:c.2314A>C
  • NM_000044.4:c.2314A>C
  • P10275:p.Asn772His
Protein change:
N240H
Links:
UniProtKB: P10275#VAR_009818; dbSNP: rs886041352
NCBI 1000 Genomes Browser:
rs886041352
Molecular consequence:
  • NM_000044.6:c.2314A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001011645.3:c.718A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000329852GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Sep 9, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000329852.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The N772H variant in the AR gene has been reported previously as N771H using alternate nomenclature in association with partial androgen insensitivity, and its presence is consistent with the diagnosis in this patient. This variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The N772H variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. This substitution occurs at a position that is conserved across species. The N772H variant is located within the ligand binding domain. In silico analysis predicts this variant is probably damaging to the protein structure/function. Additionally, a functional study has shown that this variant (reported as N771H using alternate nomenclature) significantly decreased the dose-response of dihydrotestosterone-induced transactivation activity (Cai et al., 2012). Missense variants in nearby residues (P767A, P767S, D768Y, D768V, D768E, L769V, L769M, L769P, E773G, E773A, Y774H, Y774C, R775C, R775H, R775L) have been reported in the Human Gene Mutation Database in association with Androgen insensitivity syndrome (Stenson et al., 2014), supporting the functional importance of this region of the protein. Therefore, we consider this variant to be pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 29, 2023