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NM_001352514.2(HLCS):c.2122-30G>A AND not specified

Germline classification:
Benign (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000252073.5

Allele description [Variation Report for NM_001352514.2(HLCS):c.2122-30G>A]

NM_001352514.2(HLCS):c.2122-30G>A

Gene:
HLCS:holocarboxylase synthetase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.13
Genomic location:
Preferred name:
NM_001352514.2(HLCS):c.2122-30G>A
HGVS:
  • NC_000021.9:g.36759871C>T
  • NG_016193.2:g.235524G>A
  • NM_000411.8:c.1681-30G>A
  • NM_001242784.3:c.1681-30G>A
  • NM_001242785.2:c.1681-30G>A
  • NM_001352514.2:c.2122-30G>AMANE SELECT
  • NM_001352515.2:c.1681-30G>A
  • NM_001352516.2:c.1681-30G>A
  • NM_001352517.1:c.1681-30G>A
  • NM_001352518.2:c.1681-30G>A
  • NC_000021.8:g.38132172C>T
  • NM_000411.6:c.1681-30G>A
Links:
dbSNP: rs2073420
NCBI 1000 Genomes Browser:
rs2073420
Molecular consequence:
  • NM_000411.8:c.1681-30G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001242784.3:c.1681-30G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001242785.2:c.1681-30G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352514.2:c.2122-30G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352515.2:c.1681-30G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352516.2:c.1681-30G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352517.1:c.1681-30G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352518.2:c.1681-30G>A - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

Recent activity

  • PREDICTED: Rhinolophus ferrumequinum TLE family member 1, transcriptional corepr...
    PREDICTED: Rhinolophus ferrumequinum TLE family member 1, transcriptional corepressor (TLE1), transcript variant X4, mRNA
    gi|1823796483|ref|XM_033123273.1|
    Nucleotide
  • Gallus gallus
    Gallus gallus
    Molecular basis of attack pattern in fighting
    BioProject
  • Interferons
    Interferons
    Proteins secreted by vertebrate cells in response to a wide variety of inducers. They confer resistance against many different viruses, inhibit proliferation of normal and mal...<br/>Year introduced: 1983
    MeSH
  • Growth Differentiation Factor 15
    Growth Differentiation Factor 15
    A growth differentiation factor that is secreted in response to cell stress and in response to MACROPHAGE ACTIVATION. In addition growth differentiation factor 15 demonstrates...<br/>Year introduced: 2009(1997)
    MeSH

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000304067PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benigngermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV000304067.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024