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NM_000527.5(LDLR):c.191-1G>A AND Hypercholesterolemia, familial, 1

Germline classification:
Pathogenic/Likely pathogenic (3 submissions)
Last evaluated:
Mar 30, 2017
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000238435.5

Allele description [Variation Report for NM_000527.5(LDLR):c.191-1G>A]

NM_000527.5(LDLR):c.191-1G>A

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.191-1G>A
HGVS:
  • NC_000019.10:g.11102663G>A
  • NG_009060.1:g.18283G>A
  • NG_140409.1:g.558G>A
  • NM_000527.5:c.191-1G>AMANE SELECT
  • NM_001195798.2:c.191-1G>A
  • NM_001195799.2:c.190+2318G>A
  • NM_001195800.2:c.191-1G>A
  • NM_001195803.2:c.191-1G>A
  • NM_001406861.1:c.449-1G>A
  • LRG_274t1:c.191-1G>A
  • LRG_274:g.18283G>A
  • NC_000019.9:g.11213339G>A
  • NM_000527.4:c.191-1G>A
  • c.191-1G>A
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000760; dbSNP: rs879254433
NCBI 1000 Genomes Browser:
rs879254433
Molecular consequence:
  • NM_001195799.2:c.190+2318G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000527.5:c.191-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001195798.2:c.191-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001195800.2:c.191-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001195803.2:c.191-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001406861.1:c.449-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
Observations:
20

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000294526LDLR-LOVD, British Heart Foundation
criteria provided, single submitter

(ACGS Guidelines, 2013)		Likely pathogenic
(Mar 25, 2016) 		germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV000503109Centre de Génétique Moléculaire et Chromosomique, Unité de génétique de l'Obésité et des Dyslipidémies, APHP, GH Hôpitaux Universitaires Pitié-Salpêtrière / Charles-Foix
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Dec 16, 2016) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000583640U4M - Lille University & CHRU Lille, Université de Lille - CHRU de Lille
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Mar 30, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes5320not provided2601not providedclinical testing, literature only

Citations

PubMed

Intronic mutations outside of Alu-repeat-rich domains of the LDL receptor gene are a cause of familial hypercholesterolemia.

Amsellem S, Briffaut D, Carrié A, Rabès JP, Girardet JP, Fredenrich A, Moulin P, Krempf M, Reznik Y, Vialettes B, de Gennes JL, Brukert E, Benlian P.

Hum Genet. 2002 Dec;111(6):501-10. Epub 2002 Sep 13.

PubMed [citation]
PMID:
12436241

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From LDLR-LOVD, British Heart Foundation, SCV000294526.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

From Centre de Génétique Moléculaire et Chromosomique, Unité de génétique de l'Obésité et des Dyslipidémies, APHP, GH Hôpitaux Universitaires Pitié-Salpêtrière / Charles-Foix, SCV000503109.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided25not providednot providedclinical testing PubMed (1)

Description

subjects mutated among 2600 FH index cases screened = 25 , family members = 13

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes2600not providednot provided25not providednot providednot provided

From U4M - Lille University & CHRU Lille, Université de Lille - CHRU de Lille, SCV000583640.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided27not providednot providedclinical testing PubMed (1)

Description

Dutch Lipid Clinic Scoring : Definite FH

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided27not provided20not provided

Last Updated: Sep 29, 2024