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NM_000527.5(LDLR):c.1998del (p.Trp666fs) AND Hypercholesterolemia, familial, 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 25, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000238332.1

Allele description [Variation Report for NM_000527.5(LDLR):c.1998del (p.Trp666fs)]

NM_000527.5(LDLR):c.1998del (p.Trp666fs)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1998del (p.Trp666fs)
HGVS:
  • NC_000019.10:g.11120380del
  • NG_009060.1:g.36000del
  • NM_000527.5:c.1998delMANE SELECT
  • NM_001195798.2:c.1998del
  • NM_001195799.2:c.1875del
  • NM_001195800.2:c.1494del
  • NM_001195803.2:c.1606+147del
  • NP_000518.1:p.Trp666fs
  • NP_001182727.1:p.Trp666fs
  • NP_001182728.1:p.Trp625fs
  • NP_001182729.1:p.Trp498fs
  • LRG_274:g.36000del
  • NC_000019.9:g.11231056del
  • NC_000019.9:g.11231056delG
  • c.1998delG
Protein change:
W498fs
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000273; dbSNP: rs879255106
NCBI 1000 Genomes Browser:
rs879255106
Molecular consequence:
  • NM_000527.5:c.1998del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001195798.2:c.1998del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001195799.2:c.1875del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001195800.2:c.1494del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001195803.2:c.1606+147del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000295806LDLR-LOVD, British Heart Foundation
criteria provided, single submitter

(ACGS Guidelines, 2013)		Pathogenic
(Mar 25, 2016) 		germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot provided1not providedliterature only

Citations

PubMed

Low-density lipoprotein receptor gene familial hypercholesterolemia variant database: update and pathological assessment.

Usifo E, Leigh SE, Whittall RA, Lench N, Taylor A, Yeats C, Orengo CA, Martin AC, Celli J, Humphries SE.

Ann Hum Genet. 2012 Sep;76(5):387-401. doi: 10.1111/j.1469-1809.2012.00724.x.

PubMed [citation]
PMID:
22881376

Details of each submission

From LDLR-LOVD, British Heart Foundation, SCV000295806.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Aug 5, 2023