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NM_000527.5(LDLR):c.862G>T (p.Glu288Ter) AND Hypercholesterolemia, familial, 1

Germline classification:
Pathogenic (3 submissions)
Last evaluated:
Nov 5, 2016
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000237673.3

Allele description [Variation Report for NM_000527.5(LDLR):c.862G>T (p.Glu288Ter)]

NM_000527.5(LDLR):c.862G>T (p.Glu288Ter)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.862G>T (p.Glu288Ter)
Other names:
FH Milan-2
HGVS:
  • NC_000019.10:g.11107436G>T
  • NG_009060.1:g.23056G>T
  • NM_000527.5:c.862G>TMANE SELECT
  • NM_001195798.2:c.862G>T
  • NM_001195799.2:c.739G>T
  • NM_001195800.2:c.358G>T
  • NM_001195803.2:c.481G>T
  • NP_000518.1:p.Glu288Ter
  • NP_000518.1:p.Glu288Ter
  • NP_001182727.1:p.Glu288Ter
  • NP_001182728.1:p.Glu247Ter
  • NP_001182729.1:p.Glu120Ter
  • NP_001182732.1:p.Glu161Ter
  • LRG_274t1:c.862G>T
  • LRG_274:g.23056G>T
  • LRG_274p1:p.Glu288Ter
  • NC_000019.9:g.11218112G>T
  • NM_000527.4:c.862G>T
  • c.862G>T
Protein change:
E120*
Links:
LDLR-LOVD, British Heart Foundation: LDLR_001849;
Molecular consequence:
  • NM_000527.5:c.862G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001195798.2:c.862G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001195799.2:c.739G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001195800.2:c.358G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001195803.2:c.481G>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000295017LDLR-LOVD, British Heart Foundation
criteria provided, single submitter

(ACGS Guidelines, 2013)
Pathogenic
(Mar 25, 2016)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Citation Link,

SCV000540766Molecular Genetics Laboratory, Centre for Cardiovascular Surgery and Transplantation

See additional submitters

criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Nov 5, 2016)
unknownclinical testing

PubMed (2)
[See all records that cite these PMIDs]

SCV000588524Laboratory of Genetics and Molecular Cardiology, University of São Paulo - HipercolBrasil
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Mar 1, 2016)
germlineresearch

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedresearch
not providedgermlineyes2not providednot provided2not providedliterature only
Caucasianunknownyes11not provided3964not providedclinical testing

Citations

PubMed

An APEX-based genotyping microarray for the screening of 168 mutations associated with familial hypercholesterolemia.

Dušková L, Kopečková L, Jansová E, Tichý L, Freiberger T, Zapletalová P, Soška V, Ravčuková B, Fajkusová L.

Atherosclerosis. 2011 May;216(1):139-45. doi: 10.1016/j.atherosclerosis.2011.01.023. Epub 2011 Jan 21.

PubMed [citation]
PMID:
21310417

The molecular basis of familial hypercholesterolemia in the Czech Republic: spectrum of LDLR mutations and genotype-phenotype correlations.

Tichý L, Freiberger T, Zapletalová P, Soška V, Ravčuková B, Fajkusová L.

Atherosclerosis. 2012 Aug;223(2):401-8. doi: 10.1016/j.atherosclerosis.2012.05.014. Epub 2012 May 23.

PubMed [citation]
PMID:
22698793
See all PubMed Citations (4)

Details of each submission

From LDLR-LOVD, British Heart Foundation, SCV000295017.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedliterature only PubMed (2)
2not provided1not providednot providedliterature only PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided
2germlineyes1not providednot provided1not providednot providednot provided

From Molecular Genetics Laboratory, Centre for Cardiovascular Surgery and Transplantation, SCV000540766.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian1not providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyes3964Whole bloodnot provided1not provided1not provided

From Laboratory of Genetics and Molecular Cardiology, University of São Paulo - HipercolBrasil, SCV000588524.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (2)
2not providednot providednot providednot providedresearch PubMed (2)

Description

"Assay description:Comp htz (with unknown) patients' fibroblasts, 125I-LDL assays"
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided
2germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024