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NM_000527.5(LDLR):c.941-38C>T AND Hypercholesterolemia, familial, 1

Germline classification:
Likely benign (1 submission)
Last evaluated:
Mar 25, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000237386.1

Allele description [Variation Report for NM_000527.5(LDLR):c.941-38C>T]

NM_000527.5(LDLR):c.941-38C>T

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.941-38C>T
HGVS:
  • NC_000019.10:g.11110614C>T
  • NG_009060.1:g.26234C>T
  • NM_000527.5:c.941-38C>TMANE SELECT
  • NM_001195798.2:c.941-38C>T
  • NM_001195799.2:c.818-38C>T
  • NM_001195800.2:c.437-38C>T
  • NM_001195803.2:c.560-38C>T
  • LRG_274:g.26234C>T
  • NC_000019.9:g.11221290C>T
  • c.941-38C>T
Links:
LDLR-LOVD, British Heart Foundation: LDLR_001881; dbSNP: rs879254731
NCBI 1000 Genomes Browser:
rs879254731
Molecular consequence:
  • NM_000527.5:c.941-38C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195798.2:c.941-38C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195799.2:c.818-38C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195800.2:c.437-38C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195803.2:c.560-38C>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000295085LDLR-LOVD, British Heart Foundation
criteria provided, single submitter

(ACGS Guidelines, 2013)		Likely benign
(Mar 25, 2016) 		germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot provided1not providedliterature only

Citations

PubMed

Novel LDLR variants in patients with familial hypercholesterolemia: in silico analysis as a tool to predict pathogenic variants in children and their families.

Mollaki V, Progias P, Drogari E.

Ann Hum Genet. 2013 Sep;77(5):426-34. doi: 10.1111/ahg.12032. Epub 2013 Jul 2.

PubMed [citation]
PMID:
23815734

Details of each submission

From LDLR-LOVD, British Heart Foundation, SCV000295085.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Aug 5, 2023