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NM_000166.6(GJB1):c.462T>G (p.Tyr154Ter) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 14, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000236399.1

Allele description [Variation Report for NM_000166.6(GJB1):c.462T>G (p.Tyr154Ter)]

NM_000166.6(GJB1):c.462T>G (p.Tyr154Ter)

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.462T>G (p.Tyr154Ter)
HGVS:
  • NC_000023.11:g.71224169T>G
  • NG_008357.1:g.13958T>G
  • NM_000166.6:c.462T>GMANE SELECT
  • NM_001097642.3:c.462T>G
  • NP_000157.1:p.Tyr154Ter
  • NP_001091111.1:p.Tyr154Ter
  • LRG_245t2:c.462T>G
  • LRG_245:g.13958T>G
  • LRG_245p2:p.Tyr154Ter
  • NC_000023.10:g.70444019T>G
  • NM_000166.5:c.462T>G
Protein change:
Y154*
Links:
dbSNP: rs879254098
NCBI 1000 Genomes Browser:
rs879254098
Molecular consequence:
  • NM_000166.6:c.462T>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001097642.3:c.462T>G - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000293449GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Jan 14, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000293449.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The Y154X pathogenic variant in the GJB1 gene has been previously reported in association with CMTX1 (Bone et al., 1997). It was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating is it not a common benign variant in these populations. It is predicted to cause loss of normal protein function through protein truncation as the last 130 amino acid residues are lost. This result is suggestive of mosaicism for the Y154X pathogenic variant in the GJB1 gene, as the mutant allele was present but underrepresented in comparison to the normal allele. This result was confirmed using alternative, non-overlapping primers, making it unlikely that this result is due to uneven DNA amplification. Therefore, this pathogenic variant is interpreted to be present in some, but not all, cells in this peripheral blood specimen. Sanger sequencing is not a quantitative test; thus, it is not possible to determine more precisely the level of mosaicism in this specimen. The level of mosaicism may be different in other tissues.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024