NM_000363.5(TNNI3):c.244C>T (p.Pro82Ser) AND Hypertrophic cardiomyopathy

This record was updated by the submitter. Please see the current version.

Germline classification:: Benign/Likely benign (2 submissions)
Last evaluated:: Jan 31, 2024
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000229361.24

Allele description

NM_000363.5(TNNI3):c.244C>T (p.Pro82Ser)

Gene:

TNNI3:troponin I3, cardiac type [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19q13.42

Genomic location:

Preferred name:

NM_000363.5(TNNI3):c.244C>T (p.Pro82Ser)

Other names:

p.P82S:CCG>TCG

HGVS:

NC_000019.10:g.55156239G>A
NG_007866.2:g.6494C>T
NM_000363.5:c.244C>TMANE SELECT
NP_000354.4:p.Pro82Ser
LRG_432t1:c.244C>T
LRG_432:g.6494C>T
NC_000019.9:g.55667607G>A
NM_000363.4:c.244C>T
P19429:p.Pro82Ser
c.244C>T

Protein change:

P82S; PRO82SER

Links:

UniProtKB: P19429#VAR_016078; OMIM: 191044.0003; dbSNP: rs77615401

NCBI 1000 Genomes Browser:

rs77615401

Molecular consequence:

NM_000363.5:c.244C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hypertrophic cardiomyopathy
Synonyms:: HYPERTROPHIC MYOCARDIOPATHY
Identifiers:: MONDO: MONDO:0005045; MeSH: D002312; MedGen: C0007194; Human Phenotype Ontology: HP:0001639

Recent activity

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CBOW765.fwd CBOW Volvox carteri f. nagariensis induced female Eve Volvox carteri f. nagariensis cDNA clone CBOW765 5', mRNA sequence
gi|167178457|gnl|dbEST|53691537|gb| 658.1|

Nucleotide
CBOW763.fwd CBOW Volvox carteri f. nagariensis induced female Eve Volvox carteri...
CBOW763.fwd CBOW Volvox carteri f. nagariensis induced female Eve Volvox carteri f. nagariensis cDNA clone CBOW763 5', mRNA sequence
gi|167178454|gnl|dbEST|53691534|gb| 655.1|

Nucleotide
Neckera pennata voucher Anderson 26335 (DUKE) NADH dehydrogenase subunit 5 (nad5...
Neckera pennata voucher Anderson 26335 (DUKE) NADH dehydrogenase subunit 5 (nad5) gene, partial cds; mitochondrial
gi|67036613|gb|AY908652.1|

Nucleotide
Culex quinquefasciatus isolate 136 ALIANCA 2018 odorant binding protein 16 (OBP1...
Culex quinquefasciatus isolate 136 ALIANCA 2018 odorant binding protein 16 (OBP16) gene, partial cds
gi|2644589431|gb|OP853687.1|

Nucleotide
Salmonella enterica subsp. enterica strain 030353_F3 contig00014, whole genome s...
Salmonella enterica subsp. enterica strain 030353_F3 contig00014, whole genome shotgun sequence
gi|2804659653|ref|NZ_JBHEWA01000001 gnl|WGS:NZ_JBHEWA01|contig00014

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000284653	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Benign (Jan 31, 2024)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV000414757	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Likely benign (Jun 14, 2016)	germline	clinical testing	PubMed (6) [See all records that cite these PMIDs] 11815426, 23967088, 24510615, 15607392, 18175163, 25324519 ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000284653

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Benign
(Jan 31, 2024)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000414757

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Likely benign
(Jun 14, 2016)

germline

clinical testing

PubMed (6)
[See all records that cite these PMIDs]

ICSL_Variant_Classification_20161018.pdf

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Sarcomere protein gene mutations in hypertrophic cardiomyopathy of the elderly.

Niimura H, Patton KK, McKenna WJ, Soults J, Maron BJ, Seidman JG, Seidman CE.

Circulation. 2002 Jan 29;105(4):446-51.

PubMed [citation]

PMID:: 11815426

See all PubMed Citations (7)

Details of each submission

From Invitae, SCV000284653.10

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Illumina Laboratory Services, Illumina, SCV000414757.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (6)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 16, 2024

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