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NM_152296.5(ATP1A3):c.385G>A (p.Val129Met) AND Juvenile onset psychosis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 11, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000225081.1

Allele description [Variation Report for NM_152296.5(ATP1A3):c.385G>A (p.Val129Met)]

NM_152296.5(ATP1A3):c.385G>A (p.Val129Met)

Gene:
ATP1A3:ATPase Na+/K+ transporting subunit alpha 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_152296.5(ATP1A3):c.385G>A (p.Val129Met)
HGVS:
  • NC_000019.10:g.41986202C>T
  • NG_008015.1:g.13029G>A
  • NM_001256213.2:c.418G>A
  • NM_001256214.2:c.424G>A
  • NM_152296.5:c.385G>AMANE SELECT
  • NP_001243142.1:p.Val140Met
  • NP_001243143.1:p.Val142Met
  • NP_689509.1:p.Val129Met
  • LRG_1186t1:c.385G>A
  • LRG_1186:g.13029G>A
  • LRG_1186p1:p.Val129Met
  • NC_000019.9:g.42490354C>T
  • NM_001256214.1:c.424G>A
  • NM_152296.4:c.385G>A
Protein change:
V129M
Links:
dbSNP: rs1555865401
NCBI 1000 Genomes Browser:
rs1555865401
Molecular consequence:
  • NM_001256213.2:c.418G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256214.2:c.424G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_152296.5:c.385G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Juvenile onset psychosis
Identifiers:
MedGen: CN236437

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000267646Gene Discovery Core-Manton Center, Boston Children's Hospital
criteria provided, single submitter

(Submitter's publication)
Pathogenic
(Apr 11, 2016)
de novoresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes11not provided1not providedresearch

Citations

PubMed

A novel de novo mutation in ATP1A3 and childhood-onset schizophrenia.

Smedemark-Margulies N, Brownstein CA, Vargas S, Tembulkar SK, Towne MC, Shi J, Gonzalez-Cuevas E, Liu KX, Bilguvar K, Kleiman RJ, Han MJ, Torres A, Berry GT, Yu TW, Beggs AH, Agrawal PB, Gonzalez-Heydrich J.

Cold Spring Harb Mol Case Stud. 2016 Sep;2(5):a001008. doi: 10.1101/mcs.a001008.

PubMed [citation]
PMID:
27626066
PMCID:
PMC5002930

Details of each submission

From Gene Discovery Core-Manton Center, Boston Children's Hospital, SCV000267646.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)

Description

de novo

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyes1not providednot provided1not provided1not provided

Last Updated: Oct 8, 2024