NM_001127649.3(PEX26):c.130C>T (p.Leu44Phe) AND not provided

Germline classification:: Likely benign (2 submissions)
Last evaluated:: Aug 23, 2019
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000224312.6

Allele description [Variation Report for NM_001127649.3(PEX26):c.130C>T (p.Leu44Phe)]

NM_001127649.3(PEX26):c.130C>T (p.Leu44Phe)

Gene:

PEX26:peroxisomal biogenesis factor 26 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

22q11.21

Genomic location:

Preferred name:

NM_001127649.3(PEX26):c.130C>T (p.Leu44Phe)

HGVS:

NC_000022.11:g.18078506C>T
NG_008339.1:g.5587C>T
NM_001127649.3:c.130C>TMANE SELECT
NM_001199319.2:c.130C>T
NM_017929.6:c.130C>T
NM_017929.6:c.130C>T
NP_001121121.1:p.Leu44Phe
NP_001186248.1:p.Leu44Phe
NP_060399.1:p.Leu44Phe
NC_000022.10:g.18561272C>T
NM_017929.4:c.130C>T
NM_017929.5:c.130C>T

Protein change:

L44F

Links:

dbSNP: rs150895887

NCBI 1000 Genomes Browser:

rs150895887

Molecular consequence:

NM_001127649.3:c.130C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001199319.2:c.130C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_017929.6:c.130C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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860740[uid] (1)
Taxonomy
dad49a06.x1 Wellcome CRC pCS107 tropicalis St10-12 Xenopus tropicalis cDNA clone...
dad49a06.x1 Wellcome CRC pCS107 tropicalis St10-12 Xenopus tropicalis cDNA clone IMAGE:4462739 3' similar to SW:SUI1_CHICK P51971 PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG, mRNA sequence
gi|14263264|gnl|dbEST|8650514|gb|BG 2.1|

Nucleotide
Putative clathrin assembly protein At2g25430 family [Cajanus cajan]
Putative clathrin assembly protein At2g25430 family [Cajanus cajan]
gi|1012331973|gb|KYP43422.1||gnl|WG T|KK1_035144

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000281378	Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely Benign (Sep 29, 2015)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV002575326	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Aug 23, 2019)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000281378

Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely Benign
(Sep 29, 2015)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002575326

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Aug 23, 2019)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics, SCV000281378.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

Converted during submission to Likely benign.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		not provided	0.001457	not provided	not provided

From GeneDx, SCV002575326.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

See Variant Classification Assertion Criteria.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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