U.S. flag

An official website of the United States government

NM_000251.3(MSH2):c.2388del (p.Val797fs) AND Hereditary cancer-predisposing syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 10, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000219933.5

Allele description [Variation Report for NM_000251.3(MSH2):c.2388del (p.Val797fs)]

NM_000251.3(MSH2):c.2388del (p.Val797fs)

Gene:
MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
2p21
Genomic location:
Preferred name:
NM_000251.3(MSH2):c.2388del (p.Val797fs)
HGVS:
  • NC_000002.12:g.47478449del
  • NG_007110.2:g.80326del
  • NM_000251.3:c.2388delMANE SELECT
  • NM_001258281.1:c.2190del
  • NP_000242.1:p.Val797fs
  • NP_001245210.1:p.Val731fs
  • LRG_218:g.80326del
  • NC_000002.11:g.47705588del
  • NM_000251.1:c.2388del
  • NM_000251.1:c.2388delT
  • p.Val797Leufs*15
Protein change:
V731fs
Links:
dbSNP: rs63749983
NCBI 1000 Genomes Browser:
rs63749983
Molecular consequence:
  • NM_000251.3:c.2388del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001258281.1:c.2190del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000275131Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Pathogenic
(May 10, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Germline MSH2 and MLH1 mutational spectrum in HNPCC families from Poland and the Baltic States.

Kurzawski G, Suchy J, Kładny J, Safranow K, Jakubowska A, Elsakov P, Kucinskas V, Gardovski J, Irmejs A, Sibul H, Huzarski T, Byrski T, Debniak T, Cybulski C, Gronwald J, Oszurek O, Clark J, Góźdź S, Niepsuj S, Słomski R, Pławski A, Łacka-Wojciechowska A, et al.

J Med Genet. 2002 Oct;39(10):E65. No abstract available.

PubMed [citation]
PMID:
12362047
PMCID:
PMC1734972

Novel germline MSH2 mutation in lynch syndrome patient surviving multiple cancers.

Janavicius R, Elsakov P.

Hered Cancer Clin Pract. 2012 Jan 10;10(1):1. doi: 10.1186/1897-4287-10-1.

PubMed [citation]
PMID:
22234272
PMCID:
PMC3275504
See all PubMed Citations (3)

Details of each submission

From Ambry Genetics, SCV000275131.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

The c.2388delT pathogenic mutation, located in coding exon 14 of the MSH2 gene, results from a deletion of one nucleotide at position 2388, causing a translational frameshift with a predicted alternate stop codon (p.V797Lfs*15). This alteration has been reported in the literature in 1 of 101 unrelated patients affected by colorectal cancer or an HNPCC-associated cancer (endometrium, small bowel, urinary tract); authors suggest that this mutation may be specific for Polish families as it had not been previously described at the time of publication (Kurzawski G et al, J. Med. Genet. 2002 Oct; 39(10):E65). A detailed clinical case study on a woman with this exact mutation and multiple primary tumors (7) suggest these patients do not succumb to other extracolonic cancers, provided they are regularly followed-up (Janavicius R et al, Hered Cancer Clin Pract 2012 ; 10(1):1). This alteration has also been reported in a female diagnosed with MMR deficient colorectal cancer at age 30 and having a family history of HNPCC-associated cancers (Pearlman R et al. JAMA Oncol, 2017 Apr;3:464-471). This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024