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NM_000243.3(MEFV):c.2141C>T (p.Pro714Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 29, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000219567.1

Allele description [Variation Report for NM_000243.3(MEFV):c.2141C>T (p.Pro714Leu)]

NM_000243.3(MEFV):c.2141C>T (p.Pro714Leu)

Genes:
LOC126862264:CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:3293322-3294521 [Gene]
MEFV:MEFV innate immunity regulator, pyrin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_000243.3(MEFV):c.2141C>T (p.Pro714Leu)
HGVS:
  • NC_000016.10:g.3243346G>A
  • NG_007871.1:g.18282C>T
  • NM_000243.3:c.2141C>TMANE SELECT
  • NM_001198536.2:c.*345C>T
  • NP_000234.1:p.Pro714Leu
  • NP_000234.1:p.Pro714Leu
  • LRG_190t1:c.2141C>T
  • LRG_190:g.18282C>T
  • LRG_190p1:p.Pro714Leu
  • NC_000016.9:g.3293346G>A
  • NM_000243.2:c.2141C>T
Protein change:
P714L
Links:
dbSNP: rs758628487
NCBI 1000 Genomes Browser:
rs758628487
Molecular consequence:
  • NM_001198536.2:c.*345C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_000243.3:c.2141C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000279473GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Sep 29, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000279473.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The P714L variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. The variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The P714L variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. This substitution occurs at a position in a B30.2/SPRY domain that is not conserved across species, and in silico analysis predicts this variant likely does not alter the protein structure/function. However, missense pathogenic variants in nearby residues (K716M and R717S/L/H) have been reported in the Human Gene Mutation Database in association with familial Mediterranean fever and PFAPA syndrome (Stenson et al., 2014), supporting the functional importance of this region of the protein. Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic variant or a rare benign variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 29, 2023