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NM_001292063.2(OTOG):c.8369G>A (p.Arg2790His) AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Sep 8, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000217789.8

Allele description [Variation Report for NM_001292063.2(OTOG):c.8369G>A (p.Arg2790His)]

NM_001292063.2(OTOG):c.8369G>A (p.Arg2790His)

Gene:
OTOG:otogelin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.1
Genomic location:
Preferred name:
NM_001292063.2(OTOG):c.8369G>A (p.Arg2790His)
HGVS:
  • NC_000011.10:g.17642200G>A
  • NG_033191.2:g.99828G>A
  • NM_001277269.2:c.8405G>A
  • NM_001292063.2:c.8369G>AMANE SELECT
  • NP_001264198.1:p.Arg2802His
  • NP_001264198.1:p.Arg2802His
  • NP_001278992.1:p.Arg2790His
  • NC_000011.9:g.17663747G>A
  • NM_001277269.1:c.8405G>A
  • NM_001277269.2:c.[8405G>A]
Protein change:
R2790H
Links:
dbSNP: rs117315845
NCBI 1000 Genomes Browser:
rs117315845
Molecular consequence:
  • NM_001277269.2:c.8405G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001292063.2:c.8369G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
5

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000269534Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Sep 8, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided55not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000269534.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided5not providednot providedclinical testing PubMed (1)

Description

p.Arg2802His in exon 52 of OTOG: This variant is not expected to have clinical s ignificance because it has been identified in 0.4% (54/14664) of chromosomes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.org; dbSNP rs 117315845).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided5not provided5not provided

Last Updated: Oct 20, 2024