NM_001354604.2(MITF):c.1182A>G (p.Glu394=) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Nov 24, 2014
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000215990.7

Allele description [Variation Report for NM_001354604.2(MITF):c.1182A>G (p.Glu394=)]

NM_001354604.2(MITF):c.1182A>G (p.Glu394=)

Gene:

MITF:melanocyte inducing transcription factor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p13

Genomic location:

Preferred name:

NM_001354604.2(MITF):c.1182A>G (p.Glu394=)

HGVS:

NC_000003.12:g.69964849A>G
NG_011631.1:g.230368A>G
NM_000248.4:c.861A>G
NM_001184967.2:c.1008A>G
NM_001354604.2:c.1182A>GMANE SELECT
NM_001354605.2:c.1179A>G
NM_001354606.2:c.1161A>G
NM_001354607.2:c.1113A>G
NM_001354608.2:c.1008A>G
NM_006722.3:c.1161A>G
NM_198158.3:c.843A>G
NM_198159.3:c.1164A>G
NM_198177.3:c.1116A>G
NM_198178.3:c.675A>G
NP_000239.1:p.Glu287=
NP_000239.1:p.Glu287=
NP_001171896.1:p.Glu336=
NP_001341533.1:p.Glu394=
NP_001341534.1:p.Glu393=
NP_001341535.1:p.Glu387=
NP_001341536.1:p.Glu371=
NP_001341537.1:p.Glu336=
NP_006713.1:p.Glu387=
NP_937801.1:p.Glu281=
NP_937802.1:p.Glu388=
NP_937820.1:p.Glu372=
NP_937821.2:p.Glu225=
LRG_776t1:c.861A>G
LRG_776:g.230368A>G
LRG_776p1:p.Glu287=
NC_000003.11:g.70014000A>G
NM_000248.3:c.861A>G
NM_198159.2:c.1164A>G
p.Glu388Glu

Links:

dbSNP: rs137904015

NCBI 1000 Genomes Browser:

rs137904015

Molecular consequence:

NM_000248.4:c.861A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001184967.2:c.1008A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354604.2:c.1182A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354605.2:c.1179A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354606.2:c.1161A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354607.2:c.1113A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001354608.2:c.1008A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_006722.3:c.1161A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_198158.3:c.843A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_198159.3:c.1164A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_198177.3:c.1116A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_198178.3:c.675A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000270404	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	criteria provided, single submitter (LMM Criteria)	Likely benign (Nov 24, 2014)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000270404

Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine

criteria provided, single submitter

(LMM Criteria)

Likely benign
(Nov 24, 2014)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	1	1	not provided	not provided	not provided	clinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]

PMID:: 24033266
PMCID:: PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000270404.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

Description

Glu388Glu in exon 10 of MITF: This variant is not expected to have clinical sign ificance because it does not alter an amino acid residue and is not located with in the splice consensus sequence. It has been identified in 1/8600 European Amer ican chromosomes from a broad population by the NHLBI Exome Sequencing Project ( http://evs.gs.washington.edu/EVS; dbSNP rs137904015).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		1	not provided	1	not provided

Last Updated: Oct 20, 2024

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