NM_001384140.1(PCDH15):c.1917+13GT[10] AND not specified

Germline classification:: Benign (1 submission)
Last evaluated:: Dec 8, 2014
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000214489.4

Allele description [Variation Report for NM_001384140.1(PCDH15):c.1917+13GT[10]]

NM_001384140.1(PCDH15):c.1917+13GT[10]

Gene:

PCDH15:protocadherin related 15 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

10q21.1

Genomic location:

Preferred name:

NM_001384140.1(PCDH15):c.1917+13GT[10]

HGVS:

NC_000010.11:g.54132841AC[10]
NG_009191.3:g.1501321GT[10]
NM_001142763.2:c.1932+13GT[10]
NM_001142764.2:c.1917+13GT[10]
NM_001142765.2:c.1784+20238GT[10]
NM_001142766.2:c.1917+13GT[10]
NM_001142767.2:c.1806+13GT[10]
NM_001142768.2:c.1851+13GT[10]
NM_001142769.3:c.1953+13GT[10]
NM_001142770.3:c.1917+13GT[10]
NM_001142771.2:c.1932+13GT[10]
NM_001142772.2:c.1917+13GT[10]
NM_001142773.2:c.1851+13GT[10]
NM_001354404.2:c.1851+13GT[10]
NM_001354411.2:c.1938+13GT[10]
NM_001354420.2:c.1917+13GT[10]
NM_001354429.2:c.1917+13GT[10]
NM_001354430.2:c.1917+13GT[10]
NM_001384140.1:c.1917+13GT[10]MANE SELECT
NM_033056.4:c.1917+13GT[10]
NC_000010.10:g.55892601AC[10]
NC_000010.10:g.55892601_55892602delAC
NM_033056.3:c.1917+33_1917+34delGT

Links:

dbSNP: rs5785040

NCBI 1000 Genomes Browser:

rs5785040

Molecular consequence:

NM_001142763.2:c.1932+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142764.2:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142765.2:c.1784+20238GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142766.2:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142767.2:c.1806+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142768.2:c.1851+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142769.3:c.1953+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142770.3:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142771.2:c.1932+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142772.2:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001142773.2:c.1851+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001354404.2:c.1851+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001354411.2:c.1938+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001354420.2:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001354429.2:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001354430.2:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_001384140.1:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]
NM_033056.4:c.1917+13GT[10] - intron variant - [Sequence Ontology: SO:0001627]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000269622	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	criteria provided, single submitter (LMM Criteria)	Benign (Dec 8, 2014)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000269622

Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine

criteria provided, single submitter

(LMM Criteria)

Benign
(Dec 8, 2014)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	5	5	not provided	not provided	not provided	clinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]

PMID:: 24033266
PMCID:: PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000269622.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	5	not provided	not provided	clinical testing	PubMed (1)

Description

c.1917+13GT[10] in intron 15 of PCDH15: This variant is not expected to have cli nical significance because it is not located within the splice consensus sequenc e. It has been detected in 8.9% (4209/47276) of chromosomes across several diver se populations by the Exome Aggregate Consortium (http://exac.broadinstitute.org /variant/10-55892600-TAC-T).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		5	not provided	5	not provided

Last Updated: Dec 24, 2022

ClinVar

Relating variation to medicine