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NM_000051.4(ATM):c.7901A>T (p.Asp2634Val) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 18, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000214199.12

Allele description [Variation Report for NM_000051.4(ATM):c.7901A>T (p.Asp2634Val)]

NM_000051.4(ATM):c.7901A>T (p.Asp2634Val)

Genes:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
C11orf65:chromosome 11 open reading frame 65 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.7901A>T (p.Asp2634Val)
HGVS:
  • NC_000011.10:g.108332874A>T
  • NG_009830.1:g.115043A>T
  • NG_054724.1:g.141959T>A
  • NM_000051.4:c.7901A>TMANE SELECT
  • NM_001330368.2:c.641-23803T>A
  • NM_001351110.2:c.*38+2346T>A
  • NM_001351834.2:c.7901A>T
  • NP_000042.3:p.Asp2634Val
  • NP_000042.3:p.Asp2634Val
  • NP_001338763.1:p.Asp2634Val
  • LRG_135t1:c.7901A>T
  • LRG_135:g.115043A>T
  • LRG_135p1:p.Asp2634Val
  • NC_000011.9:g.108203601A>T
  • NM_000051.3:c.7901A>T
Protein change:
D2634V
Links:
dbSNP: rs876660909
NCBI 1000 Genomes Browser:
rs876660909
Molecular consequence:
  • NM_001330368.2:c.641-23803T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351110.2:c.*38+2346T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000051.4:c.7901A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351834.2:c.7901A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000278713Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jun 18, 2024) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV000278713.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.D2634V variant (also known as c.7901A>T), located in coding exon 52 of the ATM gene, results from an A to T substitution at nucleotide position 7901. The aspartic acid at codon 2634 is replaced by valine, an amino acid with highly dissimilar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Based on the available evidence, the clinical significance of this variant remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024