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NM_004360.5(CDH1):c.2644G>A (p.Asp882Asn) AND not provided

Germline classification:
Uncertain significance (3 submissions)
Last evaluated:
Jul 20, 2021
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000212394.11

Allele description [Variation Report for NM_004360.5(CDH1):c.2644G>A (p.Asp882Asn)]

NM_004360.5(CDH1):c.2644G>A (p.Asp882Asn)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.2644G>A (p.Asp882Asn)
Other names:
p.D882N:GAC>AAC
HGVS:
  • NC_000016.10:g.68833494G>A
  • NG_008021.1:g.101203G>A
  • NM_001317184.2:c.2461G>A
  • NM_001317185.2:c.1096G>A
  • NM_001317186.2:c.679G>A
  • NM_004360.5:c.2644G>AMANE SELECT
  • NP_001304113.1:p.Asp821Asn
  • NP_001304114.1:p.Asp366Asn
  • NP_001304115.1:p.Asp227Asn
  • NP_004351.1:p.Asp882Asn
  • LRG_301t1:c.2644G>A
  • LRG_301:g.101203G>A
  • NC_000016.9:g.68867397G>A
  • NM_004360.3:c.2644G>A
  • NM_004360.4:c.2644G>A
  • p.D882N
Protein change:
D227N
Links:
dbSNP: rs200104963
NCBI 1000 Genomes Browser:
rs200104963
Molecular consequence:
  • NM_001317184.2:c.2461G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317185.2:c.1096G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317186.2:c.679G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004360.5:c.2644G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000149769GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Mar 13, 2020)
germlineclinical testing

Citation Link,

SCV001469751Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Uncertain significance
(Jul 20, 2021)
unknownclinical testing

PubMed (3)
[See all records that cite these PMIDs]

SCV001714552Mayo Clinic Laboratories, Mayo Clinic
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Aug 5, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

Variants of cancer susceptibility genes in Korean BRCA1/2 mutation-negative patients with high risk for hereditary breast cancer.

Park JS, Lee ST, Nam EJ, Han JW, Lee JY, Kim J, Kim TI, Park HS.

BMC Cancer. 2018 Jan 16;18(1):83. doi: 10.1186/s12885-017-3940-y.

PubMed [citation]
PMID:
29338689
PMCID:
PMC5769462

Multigene panel testing beyond BRCA1/2 in breast/ovarian cancer Spanish families and clinical actionability of findings.

Bonache S, Esteban I, Moles-Fernández A, Tenés A, Duran-Lozano L, Montalban G, Bach V, Carrasco E, Gadea N, López-Fernández A, Torres-Esquius S, Mancuso F, Caratú G, Vivancos A, Tuset N, Balmaña J, Gutiérrez-Enríquez S, Diez O.

J Cancer Res Clin Oncol. 2018 Dec;144(12):2495-2513. doi: 10.1007/s00432-018-2763-9. Epub 2018 Oct 10.

PubMed [citation]
PMID:
30306255
See all PubMed Citations (4)

Details of each submission

From GeneDx, SCV000149769.15

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Observed in an individual with breast cancer (Bonache 2018); This variant is associated with the following publications: (PMID: 29338689, 30306255)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001469751.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Mayo Clinic Laboratories, Mayo Clinic, SCV001714552.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: May 26, 2024