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NM_004004.6(GJB2):c.223C>T (p.Arg75Trp) AND Rare genetic deafness

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 29, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000211763.12

Allele description [Variation Report for NM_004004.6(GJB2):c.223C>T (p.Arg75Trp)]

NM_004004.6(GJB2):c.223C>T (p.Arg75Trp)

Gene:
GJB2:gap junction protein beta 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q12.11
Genomic location:
Preferred name:
NM_004004.6(GJB2):c.223C>T (p.Arg75Trp)
HGVS:
  • NC_000013.11:g.20189359G>A
  • NG_008358.1:g.8617C>T
  • NM_004004.6:c.223C>TMANE SELECT
  • NP_003995.2:p.Arg75Trp
  • NP_003995.2:p.Arg75Trp
  • LRG_1350t1:c.223C>T
  • LRG_1350:g.8617C>T
  • LRG_1350p1:p.Arg75Trp
  • NC_000013.10:g.20763498G>A
  • NM_004004.5:c.223C>T
  • P29033:p.Arg75Trp
  • c.223C>T
  • p.(Arg75Trp)
Protein change:
R75W; ARG75TRP
Links:
UniProtKB: P29033#VAR_002140; OMIM: 121011.0011; dbSNP: rs104894402
NCBI 1000 Genomes Browser:
rs104894402
Molecular consequence:
  • NM_004004.6:c.223C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Name:
Rare genetic deafness
Identifiers:
MedGen: C5680250; Orphanet: 96210

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000061485Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Pathogenic
(Sep 29, 2014)
germlineclinical testing

PubMed (15)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided22not providednot providednot providedclinical testing

Citations

PubMed

Hereditary palmoplantar keratoderma and deafness resulting from genetic mutation of Connexin 26.

Lee JY, In SI, Kim HJ, Jeong SY, Choung YH, Kim YC.

J Korean Med Sci. 2010 Oct;25(10):1539-42. doi: 10.3346/jkms.2010.25.10.1539. Epub 2010 Sep 17.

PubMed [citation]
PMID:
20890442
PMCID:
PMC2946671

Functional consequences of novel connexin 26 mutations associated with hereditary hearing loss.

Mani RS, Ganapathy A, Jalvi R, Srikumari Srisailapathy CR, Malhotra V, Chadha S, Agarwal A, Ramesh A, Rangasayee RR, Anand A.

Eur J Hum Genet. 2009 Apr;17(4):502-9. doi: 10.1038/ejhg.2008.179. Epub 2008 Oct 22.

PubMed [citation]
PMID:
18941476
PMCID:
PMC2986212
See all PubMed Citations (15)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000061485.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (15)

Description

The p.Arg75Trp variant in GJB2 has been identified as the only GJB2 variant in a t least 11 individuals with hearing loss and was not identified in 120 Indian co ntrol chromosomes and 802 Chinese control chromosomes (Richard 1998, Putcha 2007 , Mani 2009, Yuan 2009, Lee 2010, Weegerink 2011, Pang 2014 and LMM unpublished data). Most reported individuals had severe to profound hearing loss that was ei ther congenital or progressive in infancy and some individuals also had palmopla ntar keratoderma. This variant occurred de novo in 3 individuals and was identif ied in three affected parents, which supports that this variant is inherited in a dominant manner (Richard 1998, Yuan 2009, Lee 2010, Weegerink 2011, Pang 2014) . This variant has not been identified in large population studies. Furthermore, Arginine at position 75 is highly conserved across species and other analogous connexin proteins (Deng, 2006). The functional assay demonstrated that the chan ge to a Tryptophan (Trp) at position 75 has a dominant negative affect on the pr otein and disrupts the function of the gap junction (Richard 1998, Maziano 2003, Deng 2006, Zhang 2011) and is important for the postnatal development of the or gan of Corti and normal hearing (Inoshita 2008, Inoshita 2014). In summary, this variant meets our criteria to be classified as pathogenic (http://pcpgm.partner s.org/LMM).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided2not provided2not provided

Last Updated: Nov 3, 2024