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NM_000527.5(LDLR):c.1469G>T (p.Trp490Leu) AND Hypercholesterolemia, familial, 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 20, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000211612.4

Allele description [Variation Report for NM_000527.5(LDLR):c.1469G>T (p.Trp490Leu)]

NM_000527.5(LDLR):c.1469G>T (p.Trp490Leu)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1469G>T (p.Trp490Leu)
HGVS:
  • NC_000019.10:g.11113645G>T
  • NG_009060.1:g.29265G>T
  • NM_000527.5:c.1469G>TMANE SELECT
  • NM_001195798.2:c.1469G>T
  • NM_001195799.2:c.1346G>T
  • NM_001195800.2:c.965G>T
  • NM_001195803.2:c.1088G>T
  • NP_000518.1:p.Trp490Leu
  • NP_000518.1:p.Trp490Leu
  • NP_001182727.1:p.Trp490Leu
  • NP_001182728.1:p.Trp449Leu
  • NP_001182729.1:p.Trp322Leu
  • NP_001182732.1:p.Trp363Leu
  • LRG_274t1:c.1469G>T
  • LRG_274:g.29265G>T
  • LRG_274p1:p.Trp490Leu
  • NC_000019.9:g.11224321G>T
  • NM_000527.4:c.1469G>T
Protein change:
W322L
Links:
dbSNP: rs875989922
NCBI 1000 Genomes Browser:
rs875989922
Molecular consequence:
  • NM_000527.5:c.1469G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1469G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.1346G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.965G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.1088G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000268619Cardiovascular Genetics Laboratory, PathWest Laboratory Medicine WA - Fiona Stanley Hospital
no assertion criteria provided
Pathogenic
(Sep 20, 2012)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From Cardiovascular Genetics Laboratory, PathWest Laboratory Medicine WA - Fiona Stanley Hospital, SCV000268619.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences

Last Updated: Aug 5, 2023