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NM_022369.4(STRA6):c.1913G>C (p.Arg638Pro) AND Anophthalmia-microphthalmia syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 1, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000207387.1

Allele description [Variation Report for NM_022369.4(STRA6):c.1913G>C (p.Arg638Pro)]

NM_022369.4(STRA6):c.1913G>C (p.Arg638Pro)

Gene:
STRA6:signaling receptor and transporter of retinol STRA6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q24.1
Genomic location:
Preferred name:
NM_022369.4(STRA6):c.1913G>C (p.Arg638Pro)
HGVS:
  • NC_000015.10:g.74180171C>G
  • NG_009207.1:g.33860G>C
  • NM_001142617.2:c.1913G>C
  • NM_001142618.2:c.1913G>C
  • NM_001142619.2:c.1886G>C
  • NM_001199040.2:c.2024G>C
  • NM_001199041.2:c.1958G>C
  • NM_001199042.2:c.2030G>C
  • NM_022369.4:c.1913G>CMANE SELECT
  • NP_001136089.1:p.Arg638Pro
  • NP_001136090.1:p.Arg638Pro
  • NP_001136091.1:p.Arg629Pro
  • NP_001185969.1:p.Arg675Pro
  • NP_001185970.1:p.Arg653Pro
  • NP_001185971.1:p.Arg677Pro
  • NP_071764.3:p.Arg638Pro
  • NC_000015.9:g.74472512C>G
  • NM_022369.3:c.1913G>C
  • Q9BX79:p.Arg638Pro
Protein change:
R629P
Links:
UniProtKB: Q9BX79#VAR_060205; dbSNP: rs144691445
NCBI 1000 Genomes Browser:
rs144691445
Molecular consequence:
  • NM_001142617.2:c.1913G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142618.2:c.1913G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142619.2:c.1886G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001199040.2:c.2024G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001199041.2:c.1958G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001199042.2:c.2030G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_022369.4:c.1913G>C - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Anophthalmia-microphthalmia syndrome
Synonyms:
Anophthalmia/Microphthalmia; Anophthalmia - microphthalmia
Identifiers:
MedGen: C5680330; Orphanet: 98555

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000259169Paul Sabatier University EA-4555, Paul Sabatier University
criteria provided, single submitter

(Chassaing et al. (Genome Res. 2016))
Pathogenic
(Jan 1, 2013)
inheritedclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyes1not providednot provided1noclinical testing

Citations

PubMed

Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network.

Chassaing N, Davis EE, McKnight KL, Niederriter AR, Causse A, David V, Desmaison A, Lamarre S, Vincent-Delorme C, Pasquier L, Coubes C, Lacombe D, Rossi M, Dufier JL, Dollfus H, Kaplan J, Katsanis N, Etchevers HC, Faguer S, Calvas P.

Genome Res. 2016 Apr;26(4):474-85. doi: 10.1101/gr.196048.115. Epub 2016 Feb 18.

PubMed [citation]
PMID:
26893459
PMCID:
PMC4817771

Details of each submission

From Paul Sabatier University EA-4555, Paul Sabatier University, SCV000259169.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednoclinical testing PubMed (1)

Description

rare variant, predicted damaging in silico (Polyphen-2, SIFT), compound heterozygosity

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyes1DNA extracted from blood samplesnot provided1not providednot providednot provided

Last Updated: Jan 26, 2024