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NM_006772.3(SYNGAP1):c.1154C>G (p.Ser385Trp) AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Feb 13, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000203123.1

Allele description [Variation Report for NM_006772.3(SYNGAP1):c.1154C>G (p.Ser385Trp)]

NM_006772.3(SYNGAP1):c.1154C>G (p.Ser385Trp)

Genes:
SYNGAP1-AS1:SYNGAP1 antisense RNA 1 [Gene - HGNC]
SYNGAP1:synaptic Ras GTPase activating protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.32
Genomic location:
Preferred name:
NM_006772.3(SYNGAP1):c.1154C>G (p.Ser385Trp)
HGVS:
  • NC_000006.12:g.33438059C>G
  • NG_016137.2:g.22990C>G
  • NM_001130066.2:c.1154C>G
  • NM_006772.3:c.1154C>GMANE SELECT
  • NP_001123538.1:p.Ser385Trp
  • NP_006763.2:p.Ser385Trp
  • LRG_1193t1:c.1154C>G
  • LRG_1193:g.22990C>G
  • LRG_1193p1:p.Ser385Trp
  • NC_000006.11:g.33405836C>G
  • NM_006772.2:c.1154C>G
Protein change:
S385W
Links:
dbSNP: rs766006911
NCBI 1000 Genomes Browser:
rs766006911
Molecular consequence:
  • NM_001130066.2:c.1154C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006772.3:c.1154C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000258051Genomic Diagnostic Laboratory, Division of Genomic Diagnostics, Children's Hospital of Philadelphia
criteria provided, single submitter

(DGD Variant Analysis Guidelines)
Benign
(Feb 13, 2015)
unknownclinical testing

DGD_Variant_Analysis_Guidelines.docx

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Genomic Diagnostic Laboratory, Division of Genomic Diagnostics, Children's Hospital of Philadelphia, SCV000258051.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022