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NM_003242.6(TGFBR2):c.1190A>G (p.Asp397Gly) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 1, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000200504.2

Allele description [Variation Report for NM_003242.6(TGFBR2):c.1190A>G (p.Asp397Gly)]

NM_003242.6(TGFBR2):c.1190A>G (p.Asp397Gly)

Gene:
TGFBR2:transforming growth factor beta receptor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p24.1
Genomic location:
Preferred name:
NM_003242.6(TGFBR2):c.1190A>G (p.Asp397Gly)
Other names:
p.D397G:GAC>GGC
HGVS:
  • NC_000003.12:g.30672373A>G
  • NG_007490.1:g.70872A>G
  • NM_001024847.3:c.1265A>G
  • NM_001407126.1:c.1373A>G
  • NM_001407127.1:c.1298A>G
  • NM_001407128.1:c.1217A>G
  • NM_001407129.1:c.1193A>G
  • NM_001407130.1:c.1190A>G
  • NM_001407132.1:c.1085A>G
  • NM_001407133.1:c.1085A>G
  • NM_001407134.1:c.1085A>G
  • NM_001407135.1:c.1085A>G
  • NM_001407136.1:c.1085A>G
  • NM_001407137.1:c.905A>G
  • NM_001407138.1:c.830A>G
  • NM_003242.6:c.1190A>GMANE SELECT
  • NP_001020018.1:p.Asp422Gly
  • NP_001020018.1:p.Asp422Gly
  • NP_001394055.1:p.Asp458Gly
  • NP_001394056.1:p.Asp433Gly
  • NP_001394057.1:p.Asp406Gly
  • NP_001394058.1:p.Asp398Gly
  • NP_001394059.1:p.Asp397Gly
  • NP_001394061.1:p.Asp362Gly
  • NP_001394062.1:p.Asp362Gly
  • NP_001394063.1:p.Asp362Gly
  • NP_001394064.1:p.Asp362Gly
  • NP_001394065.1:p.Asp362Gly
  • NP_001394066.1:p.Asp302Gly
  • NP_001394067.1:p.Asp277Gly
  • NP_003233.4:p.Asp397Gly
  • LRG_779t1:c.1265A>G
  • LRG_779t2:c.1190A>G
  • LRG_779:g.70872A>G
  • LRG_779p1:p.Asp422Gly
  • LRG_779p2:p.Asp397Gly
  • NC_000003.11:g.30713865A>G
  • NM_001024847.2:c.1265A>G
  • NM_003242.5:c.1190A>G
Protein change:
D277G
Links:
dbSNP: rs863223846
NCBI 1000 Genomes Browser:
rs863223846
Molecular consequence:
  • NM_001024847.3:c.1265A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407126.1:c.1373A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407127.1:c.1298A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407128.1:c.1217A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407129.1:c.1193A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407130.1:c.1190A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407132.1:c.1085A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407133.1:c.1085A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407134.1:c.1085A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407135.1:c.1085A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407136.1:c.1085A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407137.1:c.905A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407138.1:c.830A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003242.6:c.1190A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000250938GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Mar 1, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000250938.14

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Asp397Gly (D397G) GAC>GGC: c.1190 A>G in exon 4 of the TGFBR2 gene (NM_003242.5)A variant of unknown significance has been identified in the TGFBR2 gene. The D397G variant has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. The D397G variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The D397G variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved across species. In silico analysis predicts this variant is probably damaging to the protein structure/function. Missense mutations in nearby residues (C394W, C394Y, C396W, A414T, A414P) have been reported in association with TAAD-related disorders, supporting the functional importance of this region of the protein. Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic mutation or a rare benign variant. This variant was found in TAADV2-PANCARD

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 5, 2022