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NM_033109.5(PNPT1):c.906C>T (p.Tyr302=) AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Jan 30, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000196124.1

Allele description [Variation Report for NM_033109.5(PNPT1):c.906C>T (p.Tyr302=)]

NM_033109.5(PNPT1):c.906C>T (p.Tyr302=)

Gene:
PNPT1:polyribonucleotide nucleotidyltransferase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.1
Genomic location:
Preferred name:
NM_033109.5(PNPT1):c.906C>T (p.Tyr302=)
Other names:
p.Y302Y:TAC>TAT
HGVS:
  • NC_000002.12:g.55672007G>A
  • NG_033012.1:g.26904C>T
  • NM_033109.5:c.906C>TMANE SELECT
  • NP_149100.2:p.Tyr302=
  • NC_000002.11:g.55899142G>A
  • NM_033109.4:c.906C>T
Links:
dbSNP: rs149239772
NCBI 1000 Genomes Browser:
rs149239772
Molecular consequence:
  • NM_033109.5:c.906C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000252099GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))		Benign
(Jan 30, 2015) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000252099.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024