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NM_001330260.2(SCN8A):c.1999-5del AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 17, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000194733.13

Allele description [Variation Report for NM_001330260.2(SCN8A):c.1999-5del]

NM_001330260.2(SCN8A):c.1999-5del

Gene:
SCN8A:sodium voltage-gated channel alpha subunit 8 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
12q13.13
Genomic location:
Preferred name:
NM_001330260.2(SCN8A):c.1999-5del
HGVS:
  • NC_000012.12:g.51745898del
  • NG_021180.3:g.160941del
  • NM_001177984.3:c.1999-5del
  • NM_001330260.2:c.1999-5delMANE SELECT
  • NM_001369788.1:c.1999-5del
  • NM_014191.4:c.1999-5del
  • LRG_1389t1:c.1999-5del
  • LRG_1389t2:c.1999-5del
  • LRG_1389:g.160941del
  • NC_000012.11:g.52139670del
  • NC_000012.11:g.52139682del
  • NM_014191.3:c.1999-5del
  • NM_014191.2:c.1999-5delT
Links:
Ambry Genetics: a882910; dbSNP: rs769940455
NCBI 1000 Genomes Browser:
rs769940455
Molecular consequence:
  • NM_001177984.3:c.1999-5del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330260.2:c.1999-5del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001369788.1:c.1999-5del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_014191.4:c.1999-5del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000248824Genetic Services Laboratory, University of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Sep 17, 2014)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV000248824.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024