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NM_000238.4(KCNH2):c.290C>G (p.Ala97Gly) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 16, 2012
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000181946.3

Allele description [Variation Report for NM_000238.4(KCNH2):c.290C>G (p.Ala97Gly)]

NM_000238.4(KCNH2):c.290C>G (p.Ala97Gly)

Gene:
KCNH2:potassium voltage-gated channel subfamily H member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q36.1
Genomic location:
Preferred name:
NM_000238.4(KCNH2):c.290C>G (p.Ala97Gly)
Other names:
p.A97G:GCC>GGC
HGVS:
  • NC_000007.14:g.150974728G>C
  • NG_008916.1:g.8199C>G
  • NM_000238.4:c.290C>GMANE SELECT
  • NM_001406755.1:c.113C>G
  • NM_172056.3:c.290C>G
  • NP_000229.1:p.Ala97Gly
  • NP_000229.1:p.Ala97Gly
  • NP_001393684.1:p.Ala38Gly
  • NP_742053.1:p.Ala97Gly
  • NP_742053.1:p.Ala97Gly
  • LRG_288t1:c.290C>G
  • LRG_288t2:c.290C>G
  • LRG_288:g.8199C>G
  • LRG_288p1:p.Ala97Gly
  • LRG_288p2:p.Ala97Gly
  • NC_000007.13:g.150671816G>C
  • NM_000238.2:c.290C>G
  • NM_000238.3:c.290C>G
  • NM_172056.2:c.290C>G
  • NR_176254.1:n.698C>G
Protein change:
A38G
Links:
dbSNP: rs794728415
NCBI 1000 Genomes Browser:
rs794728415
Molecular consequence:
  • NM_000238.4:c.290C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406755.1:c.113C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172056.3:c.290C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000234249GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(May 16, 2012)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000234249.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Ala97Gly (GCC>GGC): c.290 C>G in exon 2 of the KCNH2 gene (NM_000238.2)The Ala97Gly variant in the KCNH2 gene has not been reported as a disease-causing mutation or as a benign polymorphism, to our knowledge. Ala97Gly results in a conservative amino acid substitution of one non-polar residue for another at a position that is conserved through mammals in evolution. Nevertheless, mutations affecting nearby residues (Val94Gly, Ile96Thr, Ile96Val, Tyr99Ser) have been reported in association with LQTS, further supporting the functional importance of this region of the protein. Furthermore, the NHLBI ESP Exome Variant Server reports Ala97Gly was not observed in approximately 5,000 samples from individuals of European and African American backgrounds, indicating it is not a common benign variant in these populations.In summary, with the clinical and molecular information available at this time, we cannot unequivocally determine the clinical significance of the Ala97Gly variant. The variant is found in LQT panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 11, 2024