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NM_000238.4(KCNH2):c.2414T>G (p.Phe805Cys) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 16, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000181862.9

Allele description [Variation Report for NM_000238.4(KCNH2):c.2414T>G (p.Phe805Cys)]

NM_000238.4(KCNH2):c.2414T>G (p.Phe805Cys)

Gene:
KCNH2:potassium voltage-gated channel subfamily H member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q36.1
Genomic location:
Preferred name:
NM_000238.4(KCNH2):c.2414T>G (p.Phe805Cys)
Other names:
p.F805C:TTT>TGT
HGVS:
  • NC_000007.14:g.150949034A>C
  • NG_008916.1:g.33893T>G
  • NG_112814.1:g.250A>C
  • NM_000238.4:c.2414T>GMANE SELECT
  • NM_001406753.1:c.2126T>G
  • NM_172057.3:c.1394T>G
  • NP_000229.1:p.Phe805Cys
  • NP_000229.1:p.Phe805Cys
  • NP_001393682.1:p.Phe709Cys
  • NP_742054.1:p.Phe465Cys
  • NP_742054.1:p.Phe465Cys
  • LRG_288t1:c.2414T>G
  • LRG_288t3:c.1394T>G
  • LRG_288:g.33893T>G
  • LRG_288p1:p.Phe805Cys
  • LRG_288p3:p.Phe465Cys
  • NC_000007.13:g.150646122A>C
  • NM_000238.2:c.2414T>G
  • NM_000238.3:c.2414T>G
  • NM_172056.1:c.*865T>G
  • NM_172057.2:c.1394T>G
  • NR_176254.1:n.2822T>G
  • NR_176255.1:n.1695T>G
  • Q12809:p.Phe805Cys
Protein change:
F465C
Links:
UniProtKB: Q12809#VAR_014384; dbSNP: rs199472999
NCBI 1000 Genomes Browser:
rs199472999
Molecular consequence:
  • NM_000238.4:c.2414T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406753.1:c.2126T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172057.3:c.1394T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_176254.1:n.2822T>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176255.1:n.1695T>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000234165GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Apr 16, 2013)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000234165.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Phe805Cys (TTT>TGT): c.2414 T>G in exon 10 of the KCNH2 gene (NM_000238.2)The Phe805Cys mutation in the KCNH2 gene has been reported previously in one individual diagnosed with LQTS (Splawski I et al., 2000). Functional studies have shown that Phe805Cys results in a trafficking defect and consequent reduced potassium channel current (Ficker E et al., 2002; Anderson C et al., 2006). Also, a mutation affecting this same residue, Phe805Ser, has been reported in association with LQTS and was absent from more than 400 control alleles in this study (Splawski I et al., 2000). Mutations in nearby residues (Gly800Glu, Gly800Trp, Gly806Glu) have been reported in association with LQTS, supporting the functional importance of this residue and this region of the protein. Furthermore, Phe805Cys was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. In summary, Phe805Cys in the KCNH2 gene is interpreted as a disease-causing mutation. The variant is found in LQT panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024