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NM_000238.4(KCNH2):c.1900A>G (p.Thr634Ala) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 28, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000181826.3

Allele description [Variation Report for NM_000238.4(KCNH2):c.1900A>G (p.Thr634Ala)]

NM_000238.4(KCNH2):c.1900A>G (p.Thr634Ala)

Gene:
KCNH2:potassium voltage-gated channel subfamily H member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q36.1
Genomic location:
Preferred name:
NM_000238.4(KCNH2):c.1900A>G (p.Thr634Ala)
Other names:
p.T634A:ACC>GCC; p.Thr634Ala
HGVS:
  • NC_000007.14:g.150951493T>C
  • NG_008916.1:g.31434A>G
  • NM_000238.4:c.1900A>GMANE SELECT
  • NM_001204798.2:c.880A>G
  • NM_001406753.1:c.1612A>G
  • NM_001406755.1:c.1723A>G
  • NM_001406756.1:c.1612A>G
  • NM_001406757.1:c.1600A>G
  • NM_172056.3:c.1900A>G
  • NM_172057.3:c.880A>G
  • NP_000229.1:p.Thr634Ala
  • NP_000229.1:p.Thr634Ala
  • NP_001191727.1:p.Thr294Ala
  • NP_001393682.1:p.Thr538Ala
  • NP_001393684.1:p.Thr575Ala
  • NP_001393685.1:p.Thr538Ala
  • NP_001393686.1:p.Thr534Ala
  • NP_742053.1:p.Thr634Ala
  • NP_742053.1:p.Thr634Ala
  • NP_742054.1:p.Thr294Ala
  • NP_742054.1:p.Thr294Ala
  • LRG_288t1:c.1900A>G
  • LRG_288t2:c.1900A>G
  • LRG_288t3:c.880A>G
  • LRG_288:g.31434A>G
  • LRG_288p1:p.Thr634Ala
  • LRG_288p2:p.Thr634Ala
  • LRG_288p3:p.Thr294Ala
  • NC_000007.13:g.150648581T>C
  • NM_000238.2:c.1900A>G
  • NM_000238.3:c.1900A>G
  • NM_172056.2:c.1900A>G
  • NM_172057.2:c.880A>G
  • NR_176254.1:n.2308A>G
  • NR_176255.1:n.1181A>G
Protein change:
T294A
Links:
dbSNP: rs794728377
NCBI 1000 Genomes Browser:
rs794728377
Molecular consequence:
  • NM_000238.4:c.1900A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001204798.2:c.880A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406753.1:c.1612A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406755.1:c.1723A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406756.1:c.1612A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406757.1:c.1600A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172056.3:c.1900A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172057.3:c.880A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000234129GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(May 28, 2014)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000234129.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Thr634Ala (ACC>GCC): c.1900 A>G in exon 7 of the KCNH2 gene (NM_000238.2). The T634A mutation in the KCNH2 gene has been reported in one individual diagnosed with LQTS (Yoshinaga et al., 2013). The T634A mutation is a non-conservative amino acid substitution as these residues differ in polarity, charge, size and/or other properties and is more likely to impact secondary structure. This substitution occurs at a position that is conserved across species. A different mutation in the same residue (T634I) and mutations in nearby residues (N633D, N633S, N633I, N635D, N635I, N635K) have been reported in association with LQTS, further supporting the functional importance of this residue and of this region of the protein. Furthermore, the T634A mutation was not observed inapproximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations.In summary, T634A in the KCNH2 gene is interpreted as a disease-causing mutation. The variant is found in LQT panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024