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NM_000138.5(FBN1):c.4648A>T (p.Ser1550Cys) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 15, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000181530.3

Allele description [Variation Report for NM_000138.5(FBN1):c.4648A>T (p.Ser1550Cys)]

NM_000138.5(FBN1):c.4648A>T (p.Ser1550Cys)

Gene:
FBN1:fibrillin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q21.1
Genomic location:
Preferred name:
NM_000138.5(FBN1):c.4648A>T (p.Ser1550Cys)
Other names:
p.S1550C:AGC>TGC
HGVS:
  • NC_000015.10:g.48468037T>A
  • NG_008805.2:g.182752A>T
  • NM_000138.5:c.4648A>TMANE SELECT
  • NP_000129.3:p.Ser1550Cys
  • NP_000129.3:p.Ser1550Cys
  • LRG_778t1:c.4648A>T
  • LRG_778:g.182752A>T
  • LRG_778p1:p.Ser1550Cys
  • NC_000015.9:g.48760234T>A
  • NM_000138.4:c.4648A>T
Protein change:
S1550C
Links:
dbSNP: rs794728229
NCBI 1000 Genomes Browser:
rs794728229
Molecular consequence:
  • NM_000138.5:c.4648A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000233833GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Aug 15, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000233833.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Ser1550Cys (AGC>TGC): c.4648 A>T in exon 38 of the FBN1 gene (NM_000138.4)A variant of unknown significance has been identified in the FBN1 gene. The S1550C variant has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. The S1550C variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The S1550C variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is well conserved across species. The S1550C results in gain of Cysteine residue, which may impact disulfide bonding. In silico analysis predicts this variant is probably damaging to the protein structure/function. However, mutations in nearby residues have not been reported in association with Marfan syndrome or FBN1-related disorder, indicating this region of the protein may tolerate change. Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic mutation or a rare benign variant. The variant is found in TAAD panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024