U.S. flag

An official website of the United States government

NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 25, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000175004.5

Allele description [Variation Report for NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys)]

NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys)

Gene:
GLB1:galactosidase beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.3
Genomic location:
Preferred name:
NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys)
Other names:
p.Arg590Cys
HGVS:
  • NC_000003.12:g.32997311G>A
  • NG_009005.1:g.104892C>T
  • NM_000404.4:c.1768C>TMANE SELECT
  • NM_001079811.3:c.1678C>T
  • NM_001135602.3:c.1375C>T
  • NM_001317040.2:c.1912C>T
  • NM_001393580.1:c.1734+16745C>T
  • NP_000395.3:p.Arg590Cys
  • NP_001073279.2:p.Arg560Cys
  • NP_001129074.2:p.Arg459Cys
  • NP_001303969.2:p.Arg638Cys
  • NC_000003.11:g.33038803G>A
  • NM_000404.2:c.1768C>T
  • NM_000404.3:c.1768C>T
Protein change:
R459C
Links:
dbSNP: rs794727165
NCBI 1000 Genomes Browser:
rs794727165
Molecular consequence:
  • NM_001393580.1:c.1734+16745C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000404.4:c.1768C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001079811.3:c.1678C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001135602.3:c.1375C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317040.2:c.1912C>T - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
Unknown function
Observations:
3

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000226423Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Pathogenic
(Jun 25, 2014)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Citations

PubMed

Twenty-one novel mutations in the GLB1 gene identified in a large group of GM1-gangliosidosis and Morquio B patients: possible common origin for the prevalent p.R59H mutation among gypsies.

Santamaria R, Chabás A, Coll MJ, Miranda CS, Vilageliu L, Grinberg D.

Hum Mutat. 2006 Oct;27(10):1060.

PubMed [citation]
PMID:
16941474

Expression and characterization of 14 GLB1 mutant alleles found in GM1-gangliosidosis and Morquio B patients.

Santamaria R, Chabás A, Callahan JW, Grinberg D, Vilageliu L.

J Lipid Res. 2007 Oct;48(10):2275-82. Epub 2007 Jul 30.

PubMed [citation]
PMID:
17664528

Details of each submission

From Eurofins Ntd Llc (ga), SCV000226423.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

Last Updated: Sep 29, 2024