NM_001122630.2(CDKN1C):c.455CTCCGGTCGCGG[2] (p.152APVA[2]) AND not specified

Germline classification:: Benign (3 submissions)
Last evaluated:: Nov 7, 2017
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000173060.18

Allele description [Variation Report for NM_001122630.2(CDKN1C):c.455CTCCGGTCGCGG[2] (p.152APVA[2])]

NM_001122630.2(CDKN1C):c.455CTCCGGTCGCGG[2] (p.152APVA[2])

Gene:

CDKN1C:cyclin dependent kinase inhibitor 1C [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

11p15.4

Genomic location:

Preferred name:

NM_001122630.2(CDKN1C):c.455CTCCGGTCGCGG[2] (p.152APVA[2])

HGVS:

NC_000011.10:g.2884970CGACCGGAGCCG[2]
NG_008022.1:g.5764CTCCGGTCGCGG[2]
NM_000076.2:c.488CTCCGGTCGCGG[2]
NM_001122630.2:c.455CTCCGGTCGCGG[2]MANE SELECT
NM_001122631.2:c.455CTCCGGTCGCGG[2]
NM_001362474.2:c.488CTCCGGTCGCGG[2]
NM_001362475.2:c.255+200CTCCGGTCGCGG[2]
NP_000067.1:p.163APVA[2]
NP_001116102.1:p.152APVA[2]
NP_001116103.1:p.152APVA[2]
NP_001349403.1:p.163APVA[2]
LRG_533t1:c.488CTCCGGTCGCGG[2]
LRG_533:g.5764CTCCGGTCGCGG[2]
LRG_533p1:p.163APVA[2]
NC_000011.9:g.2906197_2906208del
NC_000011.9:g.2906200CGACCGGAGCCG[2]
NM_000076.2:c.512_523del12
NM_000076.2:c.512_523delCTCCGGTCGCGG

Links:

dbSNP: rs565544512

NCBI 1000 Genomes Browser:

rs565544512

Molecular consequence:

NM_000076.2:c.488CTCCGGTCGCGG[2] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001122630.2:c.455CTCCGGTCGCGG[2] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001122631.2:c.455CTCCGGTCGCGG[2] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001362474.2:c.488CTCCGGTCGCGG[2] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001362475.2:c.255+200CTCCGGTCGCGG[2] - intron variant - [Sequence Ontology: SO:0001627]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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hypothetical protein CEUSTIGMA_g1022.t1 [Chlamydomonas eustigma]
hypothetical protein CEUSTIGMA_g1022.t1 [Chlamydomonas eustigma]
gi|1238997711|dbj|GAX73571.1||gnl|W GY|GAX73571

Protein
Component Of for Nucleotide (Select 15638900) (10)
Nucleotide
Taxonomy Links for Protein (Select 767984460) (1)
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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000224141	Eurofins Ntd Llc (ga)	criteria provided, single submitter (EGL Classification Definitions 2015)	Benign (Nov 7, 2017)	germline	clinical testing	Citation Link,
SCV000246942	Genetic Services Laboratory, University of Chicago	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign (Jul 16, 2014)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV001932189	Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Benign	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000224141

Eurofins Ntd Llc (ga)

criteria provided, single submitter

(EGL Classification Definitions 2015)

Benign
(Nov 7, 2017)

germline

clinical testing

Citation Link,

SCV000246942

Genetic Services Laboratory, University of Chicago

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign
(Jul 16, 2014)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001932189

Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided

Benign

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	76	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Eurofins Ntd Llc (ga), SCV000224141.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	76	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		76	not provided	not provided	not provided

From Genetic Services Laboratory, University of Chicago, SCV000246942.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001932189.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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