NM_002242.4(KCNJ13):c.359T>C (p.Ile120Thr) AND not provided

Germline classification:: no classifications from unflagged records (1 submission)
Review status:: no classifications from unflagged records

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000171339.3

Allele description [Variation Report for NM_002242.4(KCNJ13):c.359T>C (p.Ile120Thr)]

NM_002242.4(KCNJ13):c.359T>C (p.Ile120Thr)

Genes:

GIGYF2:GRB10 interacting GYF protein 2 [Gene - OMIM - HGNC]
KCNJ13:potassium inwardly rectifying channel subfamily J member 13 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q37.1

Genomic location:

Preferred name:

NM_002242.4(KCNJ13):c.359T>C (p.Ile120Thr)

HGVS:

NC_000002.12:g.232771004A>G
NG_011847.1:g.78700A>G
NG_016742.1:g.10562T>C
NM_001103146.3:c.532+9568A>GMANE SELECT
NM_001103147.2:c.533-5408A>G
NM_001103148.2:c.532+9568A>G
NM_001172416.1:c.224+135T>C
NM_001172417.1:c.119T>C
NM_002242.4:c.359T>CMANE SELECT
NM_015575.4:c.532+9568A>G
NP_001165888.1:p.Ile40Thr
NP_002233.2:p.Ile120Thr
NC_000002.11:g.233635714A>G
NM_001172417.1:c.119T>C

Protein change:

I120T; ILE120THR

Links:

OMIM: 603208.0004; dbSNP: rs786205550

NCBI 1000 Genomes Browser:

rs786205550

Molecular consequence:

NM_001103146.3:c.532+9568A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001103147.2:c.533-5408A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001103148.2:c.532+9568A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001172416.1:c.224+135T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_015575.4:c.532+9568A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001172417.1:c.119T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_002242.4:c.359T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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No clinical assertions found. See "Flagged submissions" below.

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV000221536.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	research	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Flagged submissions

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000221536	Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center	flagged submission Reason: This record appears to be redundant with a more recent record from the same submitter. Notes: SCV000221536 appears to be redundant with SCV004805114. (ACMG Guidelines, 2015)	Likely pathogenic	germline	research	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000221536

Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center

flagged submission

Reason: This record appears to be redundant with a more recent record from the same submitter.

Notes: SCV000221536 appears to be redundant with SCV004805114.

(ACMG Guidelines, 2015)

Likely pathogenic

germline

research

PubMed (1)
[See all records that cite this PMID]

Last Updated: Sep 1, 2024

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