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NM_213655.5(WNK1):c.2152C>T (p.Arg718Cys) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
Oct 1, 2023
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000171203.8

Allele description [Variation Report for NM_213655.5(WNK1):c.2152C>T (p.Arg718Cys)]

NM_213655.5(WNK1):c.2152C>T (p.Arg718Cys)

Gene:
WNK1:WNK lysine deficient protein kinase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p13.33
Genomic location:
Preferred name:
NM_213655.5(WNK1):c.2152C>T (p.Arg718Cys)
HGVS:
  • NC_000012.12:g.865122C>T
  • NG_007984.3:g.117064C>T
  • NM_001184985.2:c.2140-2744C>T
  • NM_014823.3:c.2139+2852C>T
  • NM_018979.4:c.2139+2852C>TMANE SELECT
  • NM_213655.5:c.2152C>T
  • NP_998820.3:p.Arg718Cys
  • NP_998820.3:p.Arg718Cys
  • LRG_247t1:c.2139+2852C>T
  • LRG_247t2:c.2152C>T
  • LRG_247:g.117064C>T
  • LRG_247p2:p.Arg718Cys
  • NC_000012.11:g.974288C>T
  • NM_213655.4:c.2152C>T
Protein change:
R718C
Links:
dbSNP: rs786205473
NCBI 1000 Genomes Browser:
rs786205473
Molecular consequence:
  • NM_001184985.2:c.2140-2744C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_014823.3:c.2139+2852C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_018979.4:c.2139+2852C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_213655.5:c.2152C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000221400Department Of Translational Genomics (developmental Genetics Section), King Faisal Specialist Hospital & Research Centre
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenicgermlineresearch

PubMed (1)
[See all records that cite this PMID]

SCV004129676CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Uncertain significance
(Oct 1, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing, research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Department Of Translational Genomics (developmental Genetics Section), King Faisal Specialist Hospital & Research Centre, SCV000221400.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004129676.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

WNK1: PM2, BP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: May 12, 2024