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NM_001110792.2(MECP2):c.1469G>A (p.Arg490Gln) AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Dec 5, 2013
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000170088.5

Allele description [Variation Report for NM_001110792.2(MECP2):c.1469G>A (p.Arg490Gln)]

NM_001110792.2(MECP2):c.1469G>A (p.Arg490Gln)

Gene:
MECP2:methyl-CpG binding protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001110792.2(MECP2):c.1469G>A (p.Arg490Gln)
Other names:
p.R478Q:CGG>CAG; NM_001110792.2(MECP2):c.1469G>A; p.Arg490Gln
HGVS:
  • NC_000023.11:g.154030395C>T
  • NG_007107.3:g.111709G>A
  • NM_001110792.2:c.1469G>AMANE SELECT
  • NM_001316337.2:c.1154G>A
  • NM_001369391.2:c.1154G>A
  • NM_001369392.2:c.1154G>A
  • NM_001369393.2:c.1154G>A
  • NM_001369394.2:c.1154G>A
  • NM_001386137.1:c.764G>A
  • NM_001386138.1:c.764G>A
  • NM_001386139.1:c.764G>A
  • NM_004992.4:c.1433G>A
  • NP_001104262.1:p.Arg490Gln
  • NP_001303266.1:p.Arg385Gln
  • NP_001356320.1:p.Arg385Gln
  • NP_001356321.1:p.Arg385Gln
  • NP_001356322.1:p.Arg385Gln
  • NP_001356323.1:p.Arg385Gln
  • NP_001373066.1:p.Arg255Gln
  • NP_001373067.1:p.Arg255Gln
  • NP_001373068.1:p.Arg255Gln
  • NP_004983.1:p.Arg478Gln
  • NP_004983.1:p.Arg478Gln
  • LRG_764t1:c.1469G>A
  • LRG_764t2:c.1433G>A
  • LRG_764:g.111709G>A
  • LRG_764p1:p.Arg490Gln
  • LRG_764p2:p.Arg478Gln
  • NC_000023.10:g.153295846C>T
  • NG_007107.2:g.111733G>A
  • NM_004992.3:c.1433G>A
Protein change:
R255Q
Links:
dbSNP: rs145790362
NCBI 1000 Genomes Browser:
rs145790362
Molecular consequence:
  • NM_001110792.2:c.1469G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001316337.2:c.1154G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369391.2:c.1154G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369392.2:c.1154G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369393.2:c.1154G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369394.2:c.1154G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386137.1:c.764G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386138.1:c.764G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001386139.1:c.764G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004992.4:c.1433G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000222404RettBASE
no assertion criteria provided
Benign
(Dec 5, 2013)
unknowncuration

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownnot provided1not providednot provided1Nocuration

Citations

PubMed

MECP2 gene study in a large cohort: testing of 240 female patients and 861 healthy controls (519 females and 342 males).

Maortua H, Martínez-Bouzas C, García-Ribes A, Martínez MJ, Guillen E, Domingo MR, Calvo MT, Guitart M, Gabau E, Botella MP, Gener B, Rubio I, López-Aríztegui MA, Tejada MI.

J Mol Diagn. 2013 Sep;15(5):723-9. doi: 10.1016/j.jmoldx.2013.05.002. Epub 2013 Jun 26.

PubMed [citation]
PMID:
23810759

Details of each submission

From RettBASE, SCV000222404.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providedNocuration PubMed (1)

Description

"Not Rett synd. - normal control"
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownnot provided1not statednot provided1not providednot providednot provided

Last Updated: Aug 4, 2024