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NM_000551.4(VHL):c.209A>G (p.Glu70Gly) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 20, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000165891.4

Allele description [Variation Report for NM_000551.4(VHL):c.209A>G (p.Glu70Gly)]

NM_000551.4(VHL):c.209A>G (p.Glu70Gly)

Gene:
VHL:von Hippel-Lindau tumor suppressor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.3
Genomic location:
Preferred name:
NM_000551.4(VHL):c.209A>G (p.Glu70Gly)
HGVS:
  • NC_000003.12:g.10142056A>G
  • NG_008212.3:g.5422A>G
  • NM_000551.4:c.209A>GMANE SELECT
  • NM_001354723.2:c.209A>G
  • NM_198156.3:c.209A>G
  • NP_000542.1:p.Glu70Gly
  • NP_000542.1:p.Glu70Gly
  • NP_001341652.1:p.Glu70Gly
  • NP_937799.1:p.Glu70Gly
  • LRG_322t1:c.209A>G
  • LRG_322:g.5422A>G
  • LRG_322p1:p.Glu70Gly
  • NC_000003.11:g.10183740A>G
  • NM_000551.3:c.209A>G
  • p.E70G
Protein change:
E70G
Links:
dbSNP: rs786202857
NCBI 1000 Genomes Browser:
rs786202857
Molecular consequence:
  • NM_000551.4:c.209A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354723.2:c.209A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198156.3:c.209A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000216644Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(Mar 20, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Algorithmic assessment of missense mutation severity in the Von-Hippel Lindau protein.

Fields FR, Suresh N, Hiller M, Freed SD, Haldar K, Lee SW.

PLoS One. 2020;15(11):e0234100. doi: 10.1371/journal.pone.0234100.

PubMed [citation]
PMID:
33151962
PMCID:
PMC7644048

Details of each submission

From Ambry Genetics, SCV000216644.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The p.E70G variant (also known as c.209A>G), located in coding exon 1 of the VHL gene, results from an A to G substitution at nucleotide position 209. The glutamic acid at codon 70 is replaced by glycine, an amino acid with similar properties. This alteration has not been reported in the literature to date, however an alteration at the same codon, p.E70K, has been observed in multiple individuals with a history of hemangioblastoma and has been shown to cause a modest reduction (20%) in the ability of the VHL protein to bind with the alpha subunit of the hypoxia-inducible transcription factor (Olschwang S et. al, Hum. Mut. 1998;12:424-30; Hes FJ et. al. Clin. Genet. 2007 Aug;72:122-9; Cho HJ et al. J Korean Med Sci. 2009 Feb;24:77-83; Miller F et al. J Biol Chem. 2005 Mar;280:7986-96). One study using a multiparametric in silico prediction based on overall structure and stability of pVHL classified this missense alteration as "high risk" (Fields FR et al. PLoS One, 2020 Nov;15:e0234100). This amino acid position is well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024