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NM_000325.6(PITX2):c.*454C>T AND not provided

Germline classification:
Benign (2 submissions)
Last evaluated:
May 14, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000162087.3

Allele description [Variation Report for NM_000325.6(PITX2):c.*454C>T]

NM_000325.6(PITX2):c.*454C>T

Gene:
PITX2:paired like homeodomain 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q25
Genomic location:
Preferred name:
NM_000325.6(PITX2):c.*454C>T
HGVS:
  • NC_000004.12:g.110617671G>A
  • NG_007120.1:g.24682C>T
  • NM_000325.6:c.*454C>TMANE SELECT
  • NM_001204397.2:c.*454C>T
  • NM_001204398.1:c.*454C>T
  • NM_001204399.1:c.*454C>T
  • NM_153426.3:c.*454C>T
  • NM_153427.3:c.*454C>T
  • NC_000004.11:g.111538827G>A
  • NM_153427.2:c.*454C>T
Links:
dbSNP: rs6533526
NCBI 1000 Genomes Browser:
rs6533526
Molecular consequence:
  • NM_000325.6:c.*454C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204397.2:c.*454C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204398.1:c.*454C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204399.1:c.*454C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_153426.3:c.*454C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_153427.3:c.*454C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000212086Human Genetics School of Medicine of Albacete, Castilla-La Mancha University
no assertion criteria provided
pathogenicinheritednot provided

SCV001950988GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(May 14, 2021)
germlineclinical testing

Citation Link

Description

Primary Congenital Glaucoma/Juvenile Open Angle Glaucoma

SCV000212086

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritednot providednot providednot providednot provided1not providednot provided
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Human Genetics School of Medicine of Albacete, Castilla-La Mancha University, SCV000212086.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot providednot provided

Description

Converted during submission to Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritednot provided1not providednot providednot providednot providednot providednot provided

From GeneDx, SCV001950988.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 15378534)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024