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NM_000018.4(ACADVL):c.538G>A (p.Ala180Thr) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
Sep 13, 2022
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000152735.23

Allele description [Variation Report for NM_000018.4(ACADVL):c.538G>A (p.Ala180Thr)]

NM_000018.4(ACADVL):c.538G>A (p.Ala180Thr)

Gene:
ACADVL:acyl-CoA dehydrogenase very long chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_000018.4(ACADVL):c.538G>A (p.Ala180Thr)
Other names:
p.A180T:GCC>ACC; NM_000018.4(ACADVL):c.538G>A
HGVS:
  • NC_000017.11:g.7221598G>A
  • NG_007975.1:g.6765G>A
  • NG_008391.2:g.3453C>T
  • NM_000018.4:c.538G>AMANE SELECT
  • NM_001033859.3:c.472G>A
  • NM_001270447.2:c.607G>A
  • NM_001270448.2:c.310G>A
  • NP_000009.1:p.Ala180Thr
  • NP_000009.1:p.Ala180Thr
  • NP_001029031.1:p.Ala158Thr
  • NP_001257376.1:p.Ala203Thr
  • NP_001257377.1:p.Ala104Thr
  • NP_001257377.1:p.Ala104Thr
  • NC_000017.10:g.7124917G>A
  • NM_000018.2:c.538G>A
  • NM_000018.3:c.538G>A
  • NM_001033859.1:c.472G>A
  • NM_001270448.1:c.310G>A
Protein change:
A104T
Links:
dbSNP: rs727503791
NCBI 1000 Genomes Browser:
rs727503791
Molecular consequence:
  • NM_000018.4:c.538G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001033859.3:c.472G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001270447.2:c.607G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001270448.2:c.310G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
3

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000202122Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Jun 23, 2017)
germlineclinical testing

Citation Link,

SCV000238635GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Sep 13, 2022)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000202122.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From GeneDx, SCV000238635.15

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at a significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 32798077, 26385305, 29268767, 30194637, 32778825)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024