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NM_172362.3(KCNH1):c.1546C>T (p.Leu516Phe) AND Temple-Baraitser syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 1, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000149911.6

Allele description [Variation Report for NM_172362.3(KCNH1):c.1546C>T (p.Leu516Phe)]

NM_172362.3(KCNH1):c.1546C>T (p.Leu516Phe)

Gene:
KCNH1:potassium voltage-gated channel subfamily H member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q32.2
Genomic location:
Preferred name:
NM_172362.3(KCNH1):c.1546C>T (p.Leu516Phe)
HGVS:
  • NC_000001.11:g.210804083G>A
  • NG_029777.1:g.335033C>T
  • NG_029777.2:g.335033C>T
  • NM_002238.4:c.1465C>T
  • NM_172362.3:c.1546C>TMANE SELECT
  • NP_002229.1:p.Leu489Phe
  • NP_758872.1:p.Leu516Phe
  • NC_000001.10:g.210977425G>A
Protein change:
L489F; LEU489PHE
Links:
OMIM: 603305.0002; dbSNP: rs727502820
NCBI 1000 Genomes Browser:
rs727502820
Molecular consequence:
  • NM_002238.4:c.1465C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172362.3:c.1546C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Temple-Baraitser syndrome (TMBTS)
Synonyms:
Severe mental retardation and absent nails of hallux and pollex
Identifiers:
MONDO: MONDO:0012735; MedGen: C2678486; Orphanet: 420561; OMIM: 611816

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000196762OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2015)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in the voltage-gated potassium channel gene KCNH1 cause Temple-Baraitser syndrome and epilepsy.

Simons C, Rash LD, Crawford J, Ma L, Cristofori-Armstrong B, Miller D, Ru K, Baillie GJ, Alanay Y, Jacquinet A, Debray FG, Verloes A, Shen J, Yesil G, Guler S, Yuksel A, Cleary JG, Grimmond SM, McGaughran J, King GF, Gabbett MT, Taft RJ.

Nat Genet. 2015 Jan;47(1):73-7. doi: 10.1038/ng.3153. Epub 2014 Nov 24. Erratum in: Nat Genet. 2015 Mar;47(3):304. doi: 10.1038/ng0315-304b.

PubMed [citation]
PMID:
25420144

Details of each submission

From OMIM, SCV000196762.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a patient with Temple-Baraitser syndrome (TMBTS; 611816), Simons et al. (2015) identified a heterozygous c.1465C-T transition in exon 8 of the KCNH1 gene, resulting in a leu489-to-phe (L489F) substitution at a highly conserved residue in the S6 transmembrane helix, which is a central component of the channel pore. The mutation, which was found by whole-exome sequencing, was not present in the dbSNP (build 141), 1000 Genomes Project, or Exome Sequencing Project databases, or in an in-house control exome dataset of 100 family trios of children with neurologic disorders. In vitro functional expression studies in Xenopus oocytes showed that the mutation caused a decreased threshold of activation and delayed deactivation compared to wildtype, consistent with a gain of function. The patient's mother, who had epilepsy without other features of the disorder, was found to carry the mutation in the mosaic state (13.6% of reads from peripheral blood DNA). These findings suggested that a low level of this mutational load contributed to the epilepsy phenotype in the mother.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022