GRCh38/hg38 10q26.3(chr10:133461400-133563886)x3 AND See cases

Germline classification:: Benign (1 submission)
Last evaluated:: Sep 21, 2012
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000142404.5

Allele description [Variation Report for GRCh38/hg38 10q26.3(chr10:133461400-133563886)x3]

GRCh38/hg38 10q26.3(chr10:133461400-133563886)x3

Genes:

LOC130005034:ATAC-STARR-seq lymphoblastoid active region 4254 [Gene]
LOC130005035:ATAC-STARR-seq lymphoblastoid silent region 2983 [Gene]
LOC130005036:ATAC-STARR-seq lymphoblastoid silent region 2984 [Gene]
LOC126861107:BRD4-independent group 4 enhancer GRCh37_chr10:135344892-135346091 [Gene]
LOC110599585:CYP2E1 5' regulatory region [Gene]
CYP2E1:cytochrome P450 family 2 subfamily E member 1 [Gene - OMIM - HGNC]
SCART1:scavenger receptor family member expressed on T cells 1 [Gene - HGNC]
SYCE1:synaptonemal complex central element protein 1 [Gene - OMIM - HGNC]

Variant type:

copy number gain

Cytogenetic location:

10q26.3

Genomic location:

Preferred name:

GRCh38/hg38 10q26.3(chr10:133461400-133563886)x3

HGVS:

NC_000010.11:g.(?_133461400)_(133563886_?)dup
NC_000010.10:g.(?_135274904)_(135377390_?)dup
NC_000010.9:g.(?_135124894)_(135227380_?)dup

Links:

dbVar: nssv1601296; dbVar: nssv1601368; dbVar: nssv1601531; dbVar: nssv1601627; dbVar: nssv1601916; dbVar: nssv1602044; dbVar: nssv1602387; dbVar: nssv1602402; dbVar: nssv1603566; dbVar: nssv1603727; dbVar: nssv1605146; dbVar: nssv576202; dbVar: nssv576230; dbVar: nsv492183

Observations:

Condition(s)

Name:: See cases [See the Variation display for details]
Identifiers:

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Lactobacillus sp. NBRC 106024 gene for 16S rRNA, partial sequence
Lactobacillus sp. NBRC 106024 gene for 16S rRNA, partial sequence
gi|359803529|dbj|AB682326.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000173570	ISCA site 4 See additional submitters International Standards For Cytogenomic Arrays Consortium (ISCA)	no assertion criteria provided	Benign (Sep 21, 2012)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000173570

ISCA site 4

See additional submitters

no assertion criteria provided

Benign
(Sep 21, 2012)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	not provided	yes	13	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]

PMID:: 20466091
PMCID:: PMC2869000

Details of each submission

From ISCA site 4, SCV000173570.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)
2	not provided	1	not provided	not provided	clinical testing	PubMed (1)
3	not provided	1	not provided	not provided	clinical testing	PubMed (1)
4	not provided	1	not provided	not provided	clinical testing	PubMed (1)
5	not provided	1	not provided	not provided	clinical testing	PubMed (1)
6	not provided	1	not provided	not provided	clinical testing	PubMed (1)
7	not provided	1	not provided	not provided	clinical testing	PubMed (1)
8	not provided	1	not provided	not provided	clinical testing	PubMed (1)
9	not provided	1	not provided	not provided	clinical testing	PubMed (1)
10	not provided	1	not provided	not provided	clinical testing	PubMed (1)
11	not provided	1	not provided	not provided	clinical testing	PubMed (1)
12	not provided	1	not provided	not provided	clinical testing	PubMed (1)
13	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
2	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
3	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
4	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
5	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
6	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
7	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
8	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
9	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
10	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
11	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
12	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided
13	unknown	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided

Last Updated: May 7, 2024

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