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GRCh38/hg38 16p13.11(chr16:14816356-15140605)x1 AND See cases

Germline classification:
Likely benign (1 submission)
Last evaluated:
Sep 21, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000139576.5

Allele description [Variation Report for GRCh38/hg38 16p13.11(chr16:14816356-15140605)x1]

GRCh38/hg38 16p13.11(chr16:14816356-15140605)x1

Genes:
  • LOC129390770:MPRA-validated peak2507 silencer [Gene]
  • NTAN1:N-terminal asparagine amidase [Gene - OMIM - HGNC]
  • NOMO1:NODAL modulator 1 [Gene - OMIM - HGNC]
  • RRN3:RRN3 homolog, RNA polymerase I transcription factor [Gene - OMIM - HGNC]
  • LOC112340378:Sharpr-MPRA regulatory region 13846 [Gene]
  • LOC112340377:Sharpr-MPRA regulatory region 1947 [Gene]
  • LOC125146418:Sharpr-MPRA regulatory region 4661 [Gene]
  • MIR1972-1:microRNA 1972-1 [Gene - HGNC]
  • MIR3179-1:microRNA 3179-1 [Gene - HGNC]
  • MIR3180-1:microRNA 3180-1 [Gene - HGNC]
  • MIR3670-1:microRNA 3670-1 [Gene - HGNC]
  • MIR6511A1:microRNA 6511a-1 [Gene - HGNC]
  • MIR6511B2:microRNA 6511b-2 [Gene - HGNC]
  • MIR6770-1:microRNA 6770-1 [Gene - HGNC]
  • NPIPA1:nuclear pore complex interacting protein family member A1 [Gene - OMIM - HGNC]
  • PDXDC1:pyridoxal dependent decarboxylase domain containing 1 [Gene - OMIM - HGNC]
  • LOC100288162:uncharacterized LOC100288162 [Gene]
  • LOC100505915:uncharacterized LOC100505915 [Gene]
Variant type:
copy number loss
Cytogenetic location:
16p13.11
Genomic location:
Preferred name:
GRCh38/hg38 16p13.11(chr16:14816356-15140605)x1
HGVS:
  • NC_000016.10:g.(?_14816356)_(15140605_?)del
  • NC_000016.8:g.(?_14817714)_(15141963_?)del
  • NC_000016.9:g.(?_14910213)_(15234462_?)del
Links:
dbVar: nssv1605015; dbVar: nsv917051
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000180143ISCA site 4

See additional submitters

no assertion criteria provided
Likely benign
(Sep 21, 2012) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA site 4, SCV000180143.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: May 7, 2024