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NM_001110792.2(MECP2):c.623C>G (p.Thr208Ser) AND not specified

Germline classification:
Benign (5 submissions)
Last evaluated:
Apr 8, 2015
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000133167.16

Allele description [Variation Report for NM_001110792.2(MECP2):c.623C>G (p.Thr208Ser)]

NM_001110792.2(MECP2):c.623C>G (p.Thr208Ser)

Gene:
MECP2:methyl-CpG binding protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001110792.2(MECP2):c.623C>G (p.Thr208Ser)
Other names:
NM_001110792.2(MECP2):c.623C>G; p.Thr208Ser
HGVS:
  • NC_000023.11:g.154031241G>C
  • NG_007107.3:g.110863C>G
  • NM_001110792.2:c.623C>GMANE SELECT
  • NM_001316337.2:c.308C>G
  • NM_001369391.2:c.308C>G
  • NM_001369392.2:c.308C>G
  • NM_001369393.2:c.308C>G
  • NM_001369394.2:c.308C>G
  • NM_001386137.1:c.-83C>G
  • NM_001386138.1:c.-83C>G
  • NM_001386139.1:c.-83C>G
  • NM_004992.4:c.587C>G
  • NP_001104262.1:p.Thr208Ser
  • NP_001303266.1:p.Thr103Ser
  • NP_001356320.1:p.Thr103Ser
  • NP_001356321.1:p.Thr103Ser
  • NP_001356322.1:p.Thr103Ser
  • NP_001356323.1:p.Thr103Ser
  • NP_004983.1:p.Thr196Ser
  • NP_004983.1:p.Thr196Ser
  • LRG_764t1:c.623C>G
  • LRG_764t2:c.587C>G
  • AJ132917.1:c.587C>G
  • LRG_764:g.110863C>G
  • LRG_764p1:p.Thr208Ser
  • LRG_764p2:p.Thr196Ser
  • NC_000023.10:g.153296692G>C
  • NG_007107.2:g.110887C>G
  • NM_004992.3:c.587C>G
  • P51608:p.Thr196Ser
Protein change:
T103S
Links:
UniProtKB: P51608#VAR_018194; dbSNP: rs61749713
NCBI 1000 Genomes Browser:
rs61749713
Molecular consequence:
  • NM_001386137.1:c.-83C>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386138.1:c.-83C>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386139.1:c.-83C>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001110792.2:c.623C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001316337.2:c.308C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369391.2:c.308C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369392.2:c.308C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369393.2:c.308C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369394.2:c.308C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004992.4:c.587C>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000188160RettBASE
no assertion criteria provided
Benign
(Mar 29, 2011)
maternal, unknown, paternalcuration

PubMed (4)
[See all records that cite these PMIDs]

SCV000230277Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Benign
(Apr 8, 2015)
germlineclinical testing

Citation Link,

SCV000247979Genetic Services Laboratory, University of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2007)
Benign
(Feb 8, 2013)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001957171Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

SCV001974974Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalnot provided3not providednot provided3not providedcuration
not providedpaternalnot provided2not providednot provided2Nocuration
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing
not providedunknownnot provided8not providednot provided8Yescuration

Citations

PubMed

Low frequency of MECP2 mutations in mentally retarded males.

Yntema HG, Kleefstra T, Oudakker AR, Romein T, de Vries BB, Nillesen W, Sistermans EA, Brunner HG, Hamel BC, van Bokhoven H.

Eur J Hum Genet. 2002 Aug;10(8):487-90.

PubMed [citation]
PMID:
12111644

MECP2 structural and 3'-UTR variants in schizophrenia, autism and other psychiatric diseases: a possible association with autism.

Shibayama A, Cook EH Jr, Feng J, Glanzmann C, Yan J, Craddock N, Jones IR, Goldman D, Heston LL, Sommer SS.

Am J Med Genet B Neuropsychiatr Genet. 2004 Jul 1;128B(1):50-3.

PubMed [citation]
PMID:
15211631
See all PubMed Citations (5)

Details of each submission

From RettBASE, SCV000188160.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedcuration PubMed (4)
2not provided1not providednot providedcuration PubMed (4)
3not provided1not providednot providedcuration PubMed (4)
4not provided1not providedYescuration PubMed (4)
5not provided1not providednot providedcuration PubMed (4)
6not provided1not providedYescuration PubMed (4)
7not provided1not providedYescuration PubMed (4)
8not provided1not providedYescuration PubMed (4)
9not provided1not providednot providedcuration PubMed (4)
10not provided1not providednot providedcuration PubMed (4)
11not provided1not providedYescuration PubMed (4)
12not provided1not providedYescuration PubMed (4)
13not provided1not providedNocuration PubMed (4)

Description

"Not Rett synd. - mental retardation"
"Not Rett synd. - mental retardation"
"Not Rett synd. - mental retardation"
"Not Rett synd. - non-Rett syndrome control"
"Not Rett synd. - schizophrenia"
"Not Rett synd. - unaffected family member"
"Not Rett synd. - unaffected family member"
"Not Rett synd. - unaffected family member"
"Not Rett synd. - unaffected family member"
"Not Rett synd. - Schizophrenia"
"Not Rett synd. - unaffected family member"
"Not Rett synd. - unaffected family member"
"Rett syndrome - Classical"
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalnot provided1not knownnot provided1not providednot providednot provided
2maternalnot provided1not knownnot provided1not providednot providednot provided
3maternalnot provided1not knownnot provided1not providednot providednot provided
4unknownnot provided1NKnot provided1not providednot providednot provided
5unknownnot provided1blood, lymphoblastoid cell linnot provided1not providednot providednot provided
6unknownnot provided1NKnot provided1not providednot providednot provided
7unknownnot provided1NKnot provided1not providednot providednot provided
8unknownnot provided1NKnot provided1not providednot providednot provided
9paternalnot provided1bloodnot provided1not providednot providednot provided
10unknownnot provided1not providednot provided1not providednot providednot provided
11unknownnot provided1NKnot provided1not providednot providednot provided
12unknownnot provided1NKnot provided1not providednot providednot provided
13paternalnot provided1bloodnot provided1not providednot providednot provided

From Eurofins Ntd Llc (ga), SCV000230277.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From Genetic Services Laboratory, University of Chicago, SCV000247979.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001957171.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001974974.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024