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NM_001110792.2(MECP2):c.204C>T (p.Pro68=) AND not specified

Germline classification:
Benign (3 submissions)
Last evaluated:
Sep 30, 2016
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000133027.11

Allele description [Variation Report for NM_001110792.2(MECP2):c.204C>T (p.Pro68=)]

NM_001110792.2(MECP2):c.204C>T (p.Pro68=)

Gene:
MECP2:methyl-CpG binding protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001110792.2(MECP2):c.204C>T (p.Pro68=)
Other names:
NM_001110792.2(MECP2):c.204C>T; p.Pro68=
HGVS:
  • NC_000023.11:g.154032416G>A
  • NG_007107.3:g.109688C>T
  • NM_001110792.2:c.204C>TMANE SELECT
  • NM_001316337.2:c.-112C>T
  • NM_001369391.2:c.-112C>T
  • NM_001369392.2:c.-112C>T
  • NM_001369393.2:c.-112C>T
  • NM_001369394.2:c.-112C>T
  • NM_001386137.1:c.-393C>T
  • NM_001386138.1:c.-393C>T
  • NM_001386139.1:c.-393C>T
  • NM_004992.4:c.168C>T
  • NP_001104262.1:p.Pro68=
  • NP_004983.1:p.Pro56=
  • NP_004983.1:p.Pro56=
  • LRG_764t1:c.204C>T
  • LRG_764t2:c.168C>T
  • AJ132917.1:c.168C>T
  • LRG_764:g.109688C>T
  • LRG_764p1:p.Pro68=
  • LRG_764p2:p.Pro56=
  • NC_000023.10:g.153297867G>A
  • NG_007107.2:g.109712C>T
  • NM_004992.3:c.168C>T
  • p.Pro56Pro
Links:
dbSNP: rs61754435
NCBI 1000 Genomes Browser:
rs61754435
Molecular consequence:
  • NM_001316337.2:c.-112C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369391.2:c.-112C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369392.2:c.-112C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369393.2:c.-112C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369394.2:c.-112C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386137.1:c.-393C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386138.1:c.-393C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386139.1:c.-393C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001110792.2:c.204C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_004992.4:c.168C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000188014RettBASE
no assertion criteria provided
Benign
(Feb 3, 2006)
unknowncuration

PubMed (1)
[See all records that cite this PMID]

SCV000513556GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Benign
(Mar 24, 2015)
germlineclinical testing

Citation Link,

SCV000604147ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process)
Benign
(Sep 30, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownnot provided3not providednot provided3Nocuration

Citations

PubMed

Mutational analysis of the MECP2 gene in Japanese patients with Rett syndrome.

Amano K, Nomura Y, Segawa M, Yamakawa K.

J Hum Genet. 2000;45(4):231-6.

PubMed [citation]
PMID:
10944854

Details of each submission

From RettBASE, SCV000188014.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedcuration PubMed (1)
2not provided1not providednot providedcuration PubMed (1)
3not provided1not providedNocuration PubMed (1)

Description

Not known

Not known

"Rett syndrome - Not certain"
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownnot provided1Blood or skinnot provided1not providednot providednot provided
2unknownnot provided1bloodnot provided1not providednot providednot provided
3unknownnot provided1bloodnot provided1not providednot providednot provided

From GeneDx, SCV000513556.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000604147.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024