NM_000314.6(PTEN):c.-897C>G AND Hereditary cancer-predisposing syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 14, 2013
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000130379.10

Allele description [Variation Report for NM_000314.6(PTEN):c.-897C>G]

NM_000314.6(PTEN):c.-897C>G

Genes:

PTEN:phosphatase and tensin homolog [Gene - OMIM - HGNC]
LOC130004273:ATAC-STARR-seq lymphoblastoid silent region 2585 [Gene]

Variant type:

single nucleotide variant

Cytogenetic location:

10q23.31

Genomic location:

Preferred name:

NM_000314.6(PTEN):c.-897C>G

HGVS:

NC_000010.11:g.87863572C>G
NG_007466.2:g.5135C>G
NG_033079.1:g.4866G>C
NG_183718.1:g.293C>G
NM_000314.4:c.-897C>G
NM_000314.6:c.-897C>G
NM_001304717.4:c.-378C>G
NM_001304718.1:c.-1602C>G
LRG_311t1:c.-897C>G
LRG_1087:g.4866G>C
LRG_311:g.5135C>G
NC_000010.10:g.89623329C>G

Links:

dbSNP: rs587781981

NCBI 1000 Genomes Browser:

rs587781981

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

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protein canopy homolog 2 precursor [Mus musculus]
protein canopy homolog 2 precursor [Mus musculus]
gi|2716983432|ref|NP_001416160.1|

Protein
Homo sapiens mRNA; cDNA DKFZp761M0223 (from clone DKFZp761M0223)
Homo sapiens mRNA; cDNA DKFZp761M0223 (from clone DKFZp761M0223)
gi|6851002|emb|AL137938.1|

Nucleotide
OMIM Links for GEO Profiles (Select 109419390) (1)
OMIM
endoplasmic reticulum membrane adapter protein XK [Homo sapiens]
endoplasmic reticulum membrane adapter protein XK [Homo sapiens]
gi|10835267|ref|NP_066569.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000185233	Ambry Genetics	criteria provided, single submitter (Ambry Autosomal Dominant and X-Linked criteria (9/4/14))	Uncertain significance (Nov 14, 2013)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000185233

Ambry Genetics

criteria provided, single submitter

(Ambry Autosomal Dominant and X-Linked criteria (9/4/14))

Uncertain significance
(Nov 14, 2013)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV000185233.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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