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NM_001048174.2(MUTYH):c.1516C>T (p.Arg506Trp) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Feb 16, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000115763.10

Allele description [Variation Report for NM_001048174.2(MUTYH):c.1516C>T (p.Arg506Trp)]

NM_001048174.2(MUTYH):c.1516C>T (p.Arg506Trp)

Gene:
MUTYH:mutY DNA glycosylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.1
Genomic location:
Preferred name:
NM_001048174.2(MUTYH):c.1516C>T (p.Arg506Trp)
Other names:
p.R534W:CGG>TGG
HGVS:
  • NC_000001.11:g.45329356G>A
  • NG_008189.1:g.16115C>T
  • NM_001048171.2:c.1516C>T
  • NM_001048172.2:c.1519C>T
  • NM_001048173.2:c.1516C>T
  • NM_001048174.2:c.1516C>TMANE SELECT
  • NM_001128425.2:c.1600C>T
  • NM_001293190.2:c.1561C>T
  • NM_001293191.2:c.1549C>T
  • NM_001293192.2:c.1240C>T
  • NM_001293195.2:c.1516C>T
  • NM_001293196.2:c.1240C>T
  • NM_001350650.2:c.1171C>T
  • NM_001350651.2:c.1171C>T
  • NM_012222.3:c.1591C>T
  • NP_001041636.2:p.Arg506Trp
  • NP_001041637.1:p.Arg507Trp
  • NP_001041638.1:p.Arg506Trp
  • NP_001041639.1:p.Arg506Trp
  • NP_001121897.1:p.Arg534Trp
  • NP_001121897.1:p.Arg534Trp
  • NP_001280119.1:p.Arg521Trp
  • NP_001280120.1:p.Arg517Trp
  • NP_001280121.1:p.Arg414Trp
  • NP_001280124.1:p.Arg506Trp
  • NP_001280125.1:p.Arg414Trp
  • NP_001337579.1:p.Arg391Trp
  • NP_001337580.1:p.Arg391Trp
  • NP_036354.1:p.Arg531Trp
  • NP_036354.1:p.Arg531Trp
  • LRG_220t1:c.1600C>T
  • LRG_220:g.16115C>T
  • LRG_220p1:p.Arg534Trp
  • NC_000001.10:g.45795028G>A
  • NM_001128425.1:c.1600C>T
  • NM_012222.2:c.1591C>T
  • NR_146882.2:n.1924C>T
  • NR_146883.2:n.1773C>T
Protein change:
R391W
Links:
dbSNP: rs144616312
NCBI 1000 Genomes Browser:
rs144616312
Molecular consequence:
  • NM_001048171.2:c.1516C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048172.2:c.1519C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048173.2:c.1516C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048174.2:c.1516C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001128425.2:c.1600C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293190.2:c.1561C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293191.2:c.1549C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293192.2:c.1240C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293195.2:c.1516C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293196.2:c.1240C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350650.2:c.1171C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350651.2:c.1171C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_012222.3:c.1591C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_146882.2:n.1924C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146883.2:n.1773C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000149672GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Feb 16, 2024)
germlineclinical testing

Citation Link,

SCV000889530Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Uncertain significance
(Sep 6, 2019)
unknownclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Patterns and functional implications of rare germline variants across 12 cancer types.

Lu C, Xie M, Wendl MC, Wang J, McLellan MD, Leiserson MD, Huang KL, Wyczalkowski MA, Jayasinghe R, Banerjee T, Ning J, Tripathi P, Zhang Q, Niu B, Ye K, Schmidt HK, Fulton RS, McMichael JF, Batra P, Kandoth C, Bharadwaj M, Koboldt DC, et al.

Nat Commun. 2015 Dec 22;6:10086. doi: 10.1038/ncomms10086.

PubMed [citation]
PMID:
26689913
PMCID:
PMC4703835

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From GeneDx, SCV000149672.17

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 25340522, 28166811, 11092888, 23108399, 26689913, 33471991)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV000889530.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024