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NM_000021.4(PSEN1):c.1141C>T (p.Leu381Phe) AND Alzheimer disease familial 3, with spastic paraparesis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 1, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000106293.4

Allele description [Variation Report for NM_000021.4(PSEN1):c.1141C>T (p.Leu381Phe)]

NM_000021.4(PSEN1):c.1141C>T (p.Leu381Phe)

Gene:
PSEN1:presenilin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q24.2
Genomic location:
Preferred name:
NM_000021.4(PSEN1):c.1141C>T (p.Leu381Phe)
HGVS:
  • NC_000014.9:g.73217137C>T
  • NG_007386.2:g.85667C>T
  • NM_000021.4:c.1141C>TMANE SELECT
  • NM_007318.3:c.1129C>T
  • NP_000012.1:p.Leu381Phe
  • NP_015557.2:p.Leu377Phe
  • LRG_224t1:c.1141C>T
  • LRG_224:g.85667C>T
  • LRG_224p1:p.Leu381Phe
  • NC_000014.8:g.73683845C>T
  • NM_000021.3:c.1141C>T
  • p.L381F
Protein change:
L377F; LEU381PHE
Links:
OMIM: 104311.0039; dbSNP: rs63750687
NCBI 1000 Genomes Browser:
rs63750687
Molecular consequence:
  • NM_000021.4:c.1141C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007318.3:c.1129C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Alzheimer disease familial 3, with spastic paraparesis
Identifiers:
MedGen: C4015782

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000143752OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2014)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A novel p.Leu(381)Phe mutation in presenilin 1 is associated with very early onset and unusually fast progressing dementia as well as lysosomal inclusions typically seen in Kufs disease.

Dolzhanskaya N, Gonzalez MA, Sperziani F, Stefl S, Messing J, Wen GY, Alexov E, Zuchner S, Velinov M.

J Alzheimers Dis. 2014;39(1):23-7. doi: 10.3233/JAD-131340.

PubMed [citation]
PMID:
24121961
PMCID:
PMC4013718

Details of each submission

From OMIM, SCV000143752.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 3 brothers with early-onset Alzheimer disease with spastic paraparesis (see 607822) and unusually rapid progression, Dolzhanskaya et al. (2014) identified a heterozygous c.1141C-T transition in the PSEN1 gene, resulting in a leu381-to-phe (L381F) substitution at a highly conserved residue. The mutation, which was found by whole-exome sequencing and confirmed by Sanger sequencing, was not found in the Exome Variant Server database and segregated with the disorder in the family. The boys' father and paternal grandmother were reportedly similarly affected. The brothers had onset of progressive dementia and ataxia between ages 29 and 32 years; 2 died by age 32 and the other at age 36. The proband presented with memory deficits and ataxia, and later developed dysarthria, and spastic paraparesis. Electron microscopy of a skin biopsy showed lipofuscin-containing phagocytic cells and distinct curvilinear lysosomal inclusion bodies, suggestive of neuronal ceroid lipofuscinosis. Neuropathologic examination showed changes consistent with Alzheimer disease, including neuritic and amyloid-containing plaques and neurofibrillary tangles. Additional findings included Hirano bodies and granulovacuolar degeneration in the hippocampus. The proband was originally ascertained from a cohort of patients clinically thought to have autosomal dominant adult-onset neuronal ceroid lipofuscinosis (CLN4B; 162350) who were negative for mutations in the DNAJC5 gene (611203). Functional studies of the L381F variant were not performed.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024