NM_000243.3(MEFV):c.2229C>T (p.Phe743=) AND Familial Mediterranean fever

Germline classification:: Likely benign (2 submissions)
Last evaluated:: Nov 14, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000083756.9

Allele description [Variation Report for NM_000243.3(MEFV):c.2229C>T (p.Phe743=)]

NM_000243.3(MEFV):c.2229C>T (p.Phe743=)

Gene:

MEFV:MEFV innate immunity regulator, pyrin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16p13.3

Genomic location:

Preferred name:

NM_000243.3(MEFV):c.2229C>T (p.Phe743=)

HGVS:

NC_000016.10:g.3243258G>A
NG_007871.1:g.18370C>T
NM_000243.3:c.2229C>TMANE SELECT
NM_001198536.2:c.*433C>T
NP_000234.1:p.Phe743=
LRG_190:g.18370C>T
NC_000016.9:g.3293258G>A
NM_000243.1:c.2229C>T

Links:

dbSNP: rs104895152

NCBI 1000 Genomes Browser:

rs104895152

Molecular consequence:

NM_001198536.2:c.*433C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_000243.3:c.2229C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Familial Mediterranean fever (FMF)
Synonyms:: POLYSEROSITIS, FAMILIAL PAROXYSMAL; POLYSEROSITIS, RECURRENT; Periodic peritonitis; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0018088; MedGen: C0031069; Orphanet: 342; OMIM: 249100

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Mus musculus zinc finger protein 804A, mRNA (cDNA clone IMAGE:5368666), partial ...
Mus musculus zinc finger protein 804A, mRNA (cDNA clone IMAGE:5368666), partial cds
gi|23272288|gb|BC035535.1|

Nucleotide
JGI_CAAM15746.rev NIH_XGC_tropTe3 Xenopus tropicalis cDNA clone IMAGE:7686075 3'...
JGI_CAAM15746.rev NIH_XGC_tropTe3 Xenopus tropicalis cDNA clone IMAGE:7686075 3', mRNA sequence
gi|58645432|gnl|dbEST|27613007|gb|C 88.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000115850	Unité médicale des maladies autoinflammatoires, CHRU Montpellier	no classification provided	not provided	unknown	not provided
SCV001696114	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Nov 14, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000115850

Unité médicale des maladies autoinflammatoires, CHRU Montpellier

no classification provided

not provided

unknown

not provided

SCV001696114

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Nov 14, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	not provided	not provided	not provided	not provided	not provided	1	not provided	literature only

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Unité médicale des maladies autoinflammatoires, CHRU Montpellier, SCV000115850.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	not provided	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	not provided	1	not provided	not provided		not provided	not provided	not provided	not provided

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001696114.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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