NM_000104.4(CYP1B1):c.355G>T (p.Ala119Ser) AND not specified

Germline classification:: Benign/Likely benign (3 submissions)
Last evaluated:: Dec 3, 2021
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000078127.21

Allele description [Variation Report for NM_000104.4(CYP1B1):c.355G>T (p.Ala119Ser)]

NM_000104.4(CYP1B1):c.355G>T (p.Ala119Ser)

Gene:

CYP1B1:cytochrome P450 family 1 subfamily B member 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p22.2

Genomic location:

Preferred name:

NM_000104.4(CYP1B1):c.355G>T (p.Ala119Ser)

HGVS:

NC_000002.12:g.38075034C>A
NG_008386.2:g.6068G>T
NM_000104.4:c.355G>TMANE SELECT
NP_000095.2:p.Ala119Ser
NP_000095.2:p.Ala119Ser
NP_000095.2:p.Ala119Ser
NC_000002.11:g.38302177C>A
NM_000104.3:c.355G>T
Q16678:p.Ala119Ser

Protein change:

A119S

Links:

UniProtKB: Q16678#VAR_011753; dbSNP: rs1056827

NCBI 1000 Genomes Browser:

rs1056827

Molecular consequence:

NM_000104.4:c.355G>T - missense variant - [Sequence Ontology: SO:0001583]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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netrin-G1 isoform X3 [Ovis aries]
netrin-G1 isoform X3 [Ovis aries]
gi|2062748081|ref|XP_042107584.1|

Protein
PREDICTED: Homo sapiens abraxas 2, BRISC complex subunit (ABRAXAS2), transcript ...
PREDICTED: Homo sapiens abraxas 2, BRISC complex subunit (ABRAXAS2), transcript variant X2, mRNA
gi|2462518065|ref|XM_054365318.1|

Nucleotide
Sporothrix schenckii 1099-18 catalase (SPSK_06226), partial mRNA
Sporothrix schenckii 1099-18 catalase (SPSK_06226), partial mRNA
gi|1026947008|ref|XM_016732933.1|

Nucleotide
Homo sapiens GLI family zinc finger 2 (GLI2), transcript variant 1, mRNA
Homo sapiens GLI family zinc finger 2 (GLI2), transcript variant 1, mRNA
gi|1698389211|ref|NM_001371271.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000109965	Eurofins Ntd Llc (ga)	criteria provided, single submitter (EGL Classification Definitions 2015)	Benign (Aug 14, 2013)	germline	clinical testing	Citation Link,
SCV000302292	PreventionGenetics, part of Exact Sciences	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV002051058	Women's Health and Genetics/Laboratory Corporation of America, LabCorp	criteria provided, single submitter (LabCorp Variant Classification Summary - May 2015)	Likely benign (Dec 3, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000109965

Eurofins Ntd Llc (ga)

criteria provided, single submitter

(EGL Classification Definitions 2015)

Benign
(Aug 14, 2013)

germline

clinical testing

Citation Link,

SCV000302292

PreventionGenetics, part of Exact Sciences

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002051058

Women's Health and Genetics/Laboratory Corporation of America, LabCorp

criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)

Likely benign
(Dec 3, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	4	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Eurofins Ntd Llc (ga), SCV000109965.8

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	4	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		4	not provided	not provided	not provided

From PreventionGenetics, part of Exact Sciences, SCV000302292.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV002051058.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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