NM_000251.3(MSH2):c.367-681_646-956del AND Lynch syndrome

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Sep 5, 2013
Review status:: 3 stars out of maximum of 4 stars
reviewed by expert panel

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000076581.4

Allele description [Variation Report for NM_000251.3(MSH2):c.367-681_646-956del]

NM_000251.3(MSH2):c.367-681_646-956del

Gene:

MSH2:mutS homolog 2 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

2p21

Genomic location:

Preferred name:

NM_000251.3(MSH2):c.367-681_646-956del

HGVS:

NC_000002.12:g.47409413_47411458del
NG_007110.2:g.11290_13335del
NM_000251.3:c.367-681_646-956delMANE SELECT
NM_001258281.1:c.169-681_448-956del
LRG_218:g.11290_13335del
NC_000002.11:g.47636552_47638597del
NM_000251.1:c.367-681_646-956del

Note:

2046-nt deletion of exon 3 plus flanking intronic sequences in gene MSH2.

Links:

Molecular consequence:

NM_000251.3:c.367-681_646-956del - splice acceptor variant - [Sequence Ontology: SO:0001574]
NM_001258281.1:c.169-681_448-956del - splice acceptor variant - [Sequence Ontology: SO:0001574]
NM_000251.3:c.367-681_646-956del - splice donor variant - [Sequence Ontology: SO:0001575]
NM_001258281.1:c.169-681_448-956del - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:: Lynch syndrome
Identifiers:: MONDO: MONDO:0005835; MedGen: C4552100

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000107614	International Society for Gastrointestinal Hereditary Tumours (InSiGHT)	reviewed by expert panel (Guidelines v1.9)	Pathogenic (Sep 5, 2013)	germline	research	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000107614

International Society for Gastrointestinal Hereditary Tumours (InSiGHT)

reviewed by expert panel

(Guidelines v1.9)

Pathogenic
(Sep 5, 2013)

germline

research

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	research

Details of each submission

From International Society for Gastrointestinal Hereditary Tumours (InSiGHT), SCV000107614.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	research	not provided

Description

In-frame large deletion leading to protein conformational change and inactive protein

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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