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NM_000251.3(MSH2):c.2516A>G (p.His839Arg) AND Lynch syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 20, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000076492.7

Allele description [Variation Report for NM_000251.3(MSH2):c.2516A>G (p.His839Arg)]

NM_000251.3(MSH2):c.2516A>G (p.His839Arg)

Gene:
MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p21
Genomic location:
Preferred name:
NM_000251.3(MSH2):c.2516A>G (p.His839Arg)
HGVS:
  • NC_000002.12:g.47480753A>G
  • NG_007110.2:g.82630A>G
  • NM_000251.3:c.2516A>GMANE SELECT
  • NM_001258281.1:c.2318A>G
  • NP_000242.1:p.His839Arg
  • NP_000242.1:p.His839Arg
  • NP_001245210.1:p.His773Arg
  • LRG_218t1:c.2516A>G
  • LRG_218:g.82630A>G
  • LRG_218p1:p.His839Arg
  • NC_000002.11:g.47707892A>G
  • NM_000251.1:c.2516A>G
  • NM_000251.2:c.2516A>G
  • P43246:p.His839Arg
  • p.H839R
Protein change:
H773R
Links:
UniProtKB: P43246#VAR_043788; dbSNP: rs63750027
NCBI 1000 Genomes Browser:
rs63750027
Molecular consequence:
  • NM_000251.3:c.2516A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001258281.1:c.2318A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Lynch syndrome
Identifiers:
MONDO: MONDO:0005835; MedGen: C4552100

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000266197University of Washington Department of Laboratory Medicine, University of Washington
criteria provided, single submitter

(Shirts et al. (Genet Med 2016))		Uncertain significance
(Nov 20, 2015) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineno1not providednot provided1not providedclinical testing

Citations

PubMed

Improving performance of multigene panels for genomic analysis of cancer predisposition.

Shirts BH, Casadei S, Jacobson AL, Lee MK, Gulsuner S, Bennett RL, Miller M, Hall SA, Hampel H, Hisama FM, Naylor LV, Goetsch C, Leppig K, Tait JF, Scroggins SM, Turner EH, Livingston R, Salipante SJ, King MC, Walsh T, Pritchard CC.

Genet Med. 2016 Oct;18(10):974-81. doi: 10.1038/gim.2015.212. Epub 2016 Feb 4.

PubMed [citation]
PMID:
26845104

Details of each submission

From University of Washington Department of Laboratory Medicine, University of Washington, SCV000266197.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineno1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024