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NM_000527.5(LDLR):c.1356C>T (p.Cys452=) AND not provided

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000058919.1

Allele description [Variation Report for NM_000527.5(LDLR):c.1356C>T (p.Cys452=)]

NM_000527.5(LDLR):c.1356C>T (p.Cys452=)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1356C>T (p.Cys452=)
Other names:
C452C
HGVS:
  • NC_000019.10:g.11113447C>T
  • NG_009060.1:g.29067C>T
  • NM_000527.5:c.1356C>TMANE SELECT
  • NM_001195798.2:c.1356C>T
  • NM_001195799.2:c.1233C>T
  • NM_001195800.2:c.852C>T
  • NM_001195803.2:c.975C>T
  • NP_000518.1:p.Cys452=
  • NP_000518.1:p.Cys452=
  • NP_001182727.1:p.Cys452=
  • NP_001182728.1:p.Cys411=
  • NP_001182729.1:p.Cys284=
  • NP_001182732.1:p.Cys325=
  • LRG_274t1:c.1356C>T
  • LRG_274:g.29067C>T
  • LRG_274p1:p.Cys452=
  • NC_000019.9:g.11224123C>T
  • NM_000527.4:c.1356C>T
Links:
dbSNP: rs137853961
NCBI 1000 Genomes Browser:
rs137853961
Molecular consequence:
  • NM_000527.5:c.1356C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195798.2:c.1356C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195799.2:c.1233C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195800.2:c.852C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195803.2:c.975C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000090440SNPedia
no classification provided
not providedgermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot provided1not providedliterature only

Citations

PubMed

The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine.

Biesecker LG, Mullikin JC, Facio FM, Turner C, Cherukuri PF, Blakesley RW, Bouffard GG, Chines PS, Cruz P, Hansen NF, Teer JK, Maskeri B, Young AC; NISC Comparative Sequencing Program., Manolio TA, Wilson AF, Finkel T, Hwang P, Arai A, Remaley AT, Sachdev V, Shamburek R, et al.

Genome Res. 2009 Sep;19(9):1665-74. doi: 10.1101/gr.092841.109. Epub 2009 Jul 14.

PubMed [citation]
PMID:
19602640
PMCID:
PMC2752125

Details of each submission

From SNPedia, SCV000090440.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot provided1not providednot providednot providednot providednot providednot provided

Last Updated: Sep 1, 2024